View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_107 (Length: 381)

Name: NF1199_low_107
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_107
NF1199_low_107
[»] chr8 (2 HSPs)
chr8 (115-352)||(25891730-25891967)
chr8 (304-349)||(25891534-25891579)
[»] chr4 (4 HSPs)
chr4 (112-175)||(53937893-53937956)
chr4 (111-172)||(32008337-32008398)
chr4 (114-175)||(46321439-46321500)
chr4 (111-145)||(44023038-44023072)
[»] chr1 (1 HSPs)
chr1 (111-141)||(36774932-36774962)
[»] chr7 (1 HSPs)
chr7 (111-148)||(7169715-7169752)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 115 - 352
Target Start/End: Complemental strand, 25891967 - 25891730
Alignment:
Q  115 tgtaacattgtggttggtcaatatcactaatatctcaaactacaatgtaactcaagtgctatctgcttattataaaccgaaaatagcatataccattgac 214  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||     
T  25891967 tgtaacattgtggttgatcaatatcactaatatctcaaaccacaatgtaacttaagtgctatctgcttattataaaccgaaaatagcatatatcattgag 25891868  T
Q  215 ggatttcactttatctttaattttctcgcaatcaatcgttttattcattnnnnnnnttattttatttaatcgtaatatatcatcctttttcacaaatttg 314  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||    
T  25891867 ggatttcactttatctttatttttctcgcaatcaatcgttttattcattaaaaaaattattttatttaatcgtaatttatcatcctttttcacaaatttg 25891768  T
Q  315 aggatgacatataaatggtggtttgaaccaccagcatc 352  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25891767 aggatgacatataaatggaggtttgaaccaccagcatc 25891730  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 25891579 - 25891534
Alignment:
Q  304 tcacaaatttgaggatgacatataaatggtggtttgaaccaccagc 349  Q
    ||||||||| |||||||| ||| || ||||||||||||||||||||    
T  25891579 tcacaaattagaggatgatataaaagtggtggtttgaaccaccagc 25891534  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 53937956 - 53937893
Alignment:
Q  112 acttgtaacattgtggttggtcaatatcactaatatctcaaactacaatgtaactcaagtgcta 175  Q
    |||||| ||||||||||||||||||||||||||| || | ||| ||||||| ||||||||||||    
T  53937956 acttgtgacattgtggttggtcaatatcactaatgtcactaaccacaatgttactcaagtgcta 53937893  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 32008337 - 32008398
Alignment:
Q  111 cacttgtaacattgtggttggtcaatatcactaatatctcaaactacaatgtaactcaagtg 172  Q
    ||||||||||||| ||||||||||||||||||||| || | ||| ||||||| || ||||||    
T  32008337 cacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 32008398  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 46321439 - 46321500
Alignment:
Q  114 ttgtaacattgtggttggtcaatatcactaatatctcaaactacaatgtaactcaagtgcta 175  Q
    |||| |||||||||||||||||| |||| |||||| | ||| ||||||| ||||||||||||    
T  46321439 ttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgcta 46321500  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 44023038 - 44023072
Alignment:
Q  111 cacttgtaacattgtggttggtcaatatcactaat 145  Q
    |||||||||||||||||||||||||| ||||||||    
T  44023038 cacttgtaacattgtggttggtcaatgtcactaat 44023072  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 36774932 - 36774962
Alignment:
Q  111 cacttgtaacattgtggttggtcaatatcac 141  Q
    |||||||||||||||||||||||||||||||    
T  36774932 cacttgtaacattgtggttggtcaatatcac 36774962  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 7169752 - 7169715
Alignment:
Q  111 cacttgtaacattgtggttggtcaatatcactaatatc 148  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  7169752 cacttgtaacattgtggttgatcaatatcacaaatatc 7169715  T

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