View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_109 (Length: 380)

Name: NF1199_low_109
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_109
NF1199_low_109
[»] chr2 (2 HSPs)
chr2 (29-313)||(15395400-15395684)
chr2 (29-307)||(15387032-15387310)
[»] chr4 (1 HSPs)
chr4 (164-282)||(38667782-38667900)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 15395684 - 15395400
Alignment:
Q  29 aacaaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15395684 aacaaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctc 15395585  T
Q  129 ttaagacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactct 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15395584 ttaagacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactct 15395485  T
Q  229 atctgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctgtaacaccaaggcgg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15395484 atctgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctgtaacaccaaggcgg 15395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 29 - 307
Target Start/End: Complemental strand, 15387310 - 15387032
Alignment:
Q  29 aacaaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15387310 aacaaacctgttatgctaagcaagattccaccaagggaaagccaactatctttgcgtccgtctcttagataccgatacacgtagagaggcgaaaaggctc 15387211  T
Q  129 ttaagacactgccaccaaatctccacaaattgtaaatacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactct 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15387210 ttaagacactgccaccaaatctccacaaattgtaaatacctatacccccaataagaagaaaccaaagcagaacaattggagcaaagagccaaccaactct 15387111  T
Q  229 atctgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaatcagcacaactactcctgtaacacca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15387110 atctgtaccataacgttgtatgctgaatagtccaactaatattacaacagcaaccagcacaactactcctgtaacacca 15387032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 38667782 - 38667900
Alignment:
Q  164 atacctatacctccaataagaagaaaccaaagaagaacaattggagcaaagagccaaccaactctatctgtaccataacgttgtatgctgaatagtccaa 263  Q
    ||||| |||||||| || || ||||||||||| || |||||||||||||||||||||| |||| | ||||| |||||| |||| | |||||| | |||||    
T  38667782 ataccaatacctcctattaggagaaaccaaaggaggacaattggagcaaagagccaactaactttgtctgtgccataatgttgcaggctgaaaaatccaa 38667881  T
Q  264 ctaatattacaacagcaat 282  Q
    |||||||||||||||||||    
T  38667882 ctaatattacaacagcaat 38667900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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