View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_112 (Length: 376)
Name: NF1199_low_112
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 93 - 366
Target Start/End: Complemental strand, 8383488 - 8383215
Alignment:
| Q |
93 |
taaattaaatcacttttttgggattttcaaatctatgaaacatttttgttataaccaatatgttcatgtcgtgttgttgtttggcaccatagtgtatata |
192 |
Q |
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| T |
8383488 |
taaattaaatcacttttttgggattttcaaatctatgaaacatttttggtataaccaatatgttcatgtcgtgttgttgtttggtaccatagtgtatata |
8383389 |
T |
|
| Q |
193 |
cattaaatcttatgtatcagtgctaaatagttatgaatgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaa |
292 |
Q |
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| T |
8383388 |
cattaaatcttatgtatcagtgctaaatagttatgaatgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaa |
8383289 |
T |
|
| Q |
293 |
gctctacgacaataagtttaccatcactgaagatactgcaaattgacatcttcggttatgtggaagtgcctatg |
366 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8383288 |
gctttacgacaataagtttaccatcactgaagatactgctaattgacatcttcggttatgtggaagtgcctatg |
8383215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 8367348 - 8367228
Alignment:
| Q |
234 |
atataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctctacgacaataagtttaccatcactgaagatactgcaa |
333 |
Q |
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|||||| |||||| ||||||| |||||| || | | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8367348 |
atataatataatttgtttgttacacagtattcgtagtgaaattcatctaaacattcaaagctctacgacaataagtttaccatcactgaagatactgcta |
8367249 |
T |
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| Q |
334 |
attgacatcttcggttatgtg |
354 |
Q |
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| T |
8367248 |
attgacatcttcggttatgtg |
8367228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 360
Target Start/End: Original strand, 4441280 - 4441497
Alignment:
| Q |
144 |
taaccaatatgttcatgtcgtgttgttgtttggcaccatagtgtatatacattaaatcttatgtatcagtgctaaatagttatgaa-tgtgatataaaat |
242 |
Q |
| |
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||||||||||||| |||||||||||||| | ||||| ||||||||| || ||||||| |||||||| ||||||||||||||| |||||||||| || |
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| T |
4441280 |
taaccaatatgttagtgtcgtgttgttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtcctaaatagttatgaaatgtgatataacat |
4441379 |
T |
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| Q |
243 |
aattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctctacgacaataagtttaccatcactgaagatactgcaaattgacatc |
342 |
Q |
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||| ||||||||| |||| |||| || |||||||||| || | |||||| |||| |||||||||||||||| |||||||| |||| |||||| || |
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| T |
4441380 |
tatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccatcgctgaagatgctgctaattgatgtc |
4441479 |
T |
|
| Q |
343 |
ttcggttatgtggaagtg |
360 |
Q |
| |
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||||| | ||||||||| |
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| T |
4441480 |
ctcggtaacgtggaagtg |
4441497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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