View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_113 (Length: 375)
Name: NF1199_low_113
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_113 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 375
Target Start/End: Original strand, 6821387 - 6821760
Alignment:
| Q |
4 |
aaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcatcatttgta |
103 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6821387 |
aaaacatcggcatcatgaaaatacattgtcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcatcatttact |
6821486 |
T |
|
| Q |
104 |
tagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatttaaaaaatat--atataaaatctaagacatttttaatacttcttag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
6821487 |
tagaaaaacaaacagattgatgactcttgacaacaatatagaagtggatttattcaaaaaaaaataatataaaatctaagacatttttaatacttcttag |
6821586 |
T |
|
| Q |
202 |
aataccactatagccaatttcatacagatgtggaagacaacattttgcaagaaacagtagacacaatccttacacacacaaattagcccataattagttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6821587 |
aataccactatagccaatttcatacagaagcggaacacaacattttgcaagaaacagtagacacaatccttacactcacaaattagcccataattagttt |
6821686 |
T |
|
| Q |
302 |
ctatagcatcaaattggcagacgcaaaacaattatctaccaaacatcaactatcttgtactagttattcaatca |
375 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6821687 |
ctatagcaccaaattggcagaagcaaaacaattatctaccaaacatcaactattttgtactagttattcaatca |
6821760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 7848389 - 7848765
Alignment:
| Q |
1 |
tagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcatcattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7848389 |
tagaaaccatcggcatcatgaaaatacatcatcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcgtcattt |
7848488 |
T |
|
| Q |
101 |
gtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatttaaaaaatat--atataaaatctaagacatttttaatacttct |
198 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
7848489 |
gcatagaaaaacaaacagattgatgactcttgacaacaatatagaagtggatttattaaaaaaaaatgtatataaaatctaagacatttttaatatttct |
7848588 |
T |
|
| Q |
199 |
tagaataccactatagccaatttcatacagatgtggaagacaacattttgcaagaaacagtagacacaatccttacacacacaaattagcccataattag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
7848589 |
tagaataccactatagccaatttcatacagatgtggaacacaacattttacaaggaacagtagacacaatccttacactcatagattagcccataattaa |
7848688 |
T |
|
| Q |
299 |
tttctatagcatcaaattggcagacgcaaaacaattatctaccaaacatcaactatcttgtactagttattcaatca |
375 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7848689 |
tttctatagcaccaaattggcagaagcaaaacaattatctactaaacatcaactatcttgtactagttattcaatca |
7848765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14745578 - 14745678
Alignment:
| Q |
1 |
tagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcatcattt |
100 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| || |||||| |
|
|
| T |
14745578 |
tagaaaacatcctcatcatgatcatacatcgtcattcacaccacatattttaatcaacatcattattctcatcatcaagcaattttaagcatcgtcattt |
14745677 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
|
|
| T |
14745678 |
g |
14745678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22396537 - 22396448
Alignment:
| Q |
1 |
tagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagc |
90 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
22396537 |
tagaaaacatcctcatcatgaacatacatcgccattcacaccacatattttaatcaacatcattattttcatcatgaaacaattttaagc |
22396448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 35922482 - 35922133
Alignment:
| Q |
1 |
tagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcctcatcattt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
35922482 |
tagaatacatcggcatcatgaaaatacatcgtcatttacaccgcaaattttaattgacatcattattcacatcatcaaacaattttaagcctcgtcattt |
35922383 |
T |
|
| Q |
101 |
gtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatttaaaaaatatatataaaatctaagacatttttaatacttctta |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
35922382 |
gcatagaaaaacaaacagattgatgacttttgtcaacaatatagaagtggatttattcgaaaaaaagatataaaatctaagacatttttaa---ttctta |
35922286 |
T |
|
| Q |
201 |
gaataccactatagccaatttcatacagatgtggaagacaacattttgcaagaaacagtagacacaatccttacacacacaaattagcccataattagtt |
300 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| || |||| ||||| |||||||| |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
35922285 |
gaataccaccataaccaatttcatacagatgtccaacacaatattttacaagaaaccacggacacaatccttacactcacaaattagcctataattagtt |
35922186 |
T |
|
| Q |
301 |
tctatagcatcaaattggcagacgcaaaacaattatctaccaaacatcaacta |
353 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35922185 |
tctatagcaccgaattggcagaagcaaaacaattatctaccaaacatcaacta |
35922133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 22521674 - 22521729
Alignment:
| Q |
34 |
attcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaag |
89 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||| | | |||||||| |
|
|
| T |
22521674 |
attcacaccacaaattttaatcaacatcagtattcacatcatcgagcaattttaag |
22521729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 98 - 359
Target Start/End: Complemental strand, 45564825 - 45564564
Alignment:
| Q |
98 |
tttgtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatt-taaaaaatatatataaaatctaagacatttttaatactt |
196 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
45564825 |
tttgcatagaaaaacaaacagattgacgactcttggcaacagtatagaagtggatttatcctaaaaaaaat---taaaatcgaagacatttttaatactt |
45564729 |
T |
|
| Q |
197 |
cttagaataccactatagccaatttcatacagatgtggaagacaacattttgcaagaaacagtagacac--aatccttacacacacaaattagcccataa |
294 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||| ||||||| ||| | | ||||| ||||||| |
|
|
| T |
45564728 |
cttagaacaccactatagccaatttcatacagatgtacaacaaaacattttacaagaaacagtagacacaaaatcctttcactcgcgaattatcccataa |
45564629 |
T |
|
| Q |
295 |
ttagtttctatagcatcaaattggcagacgcaaaacaattatctaccaaacatcaactatcttgt |
359 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45564628 |
ttagtttctatagcaccgaattggcagttgcaaaacaattatcaaccaaacatcaactatcttgt |
45564564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19019759 - 19019845
Alignment:
| Q |
1 |
tagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactatttta |
87 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | |||||| |
|
|
| T |
19019759 |
tagagaacatcgttatcatgaacatacatcgtcattcacaccacaaattttaatcaacattattattctcatcatcaagcaatttta |
19019845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University