View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_115 (Length: 369)
Name: NF1199_low_115
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_115 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 35936653 - 35936288
Alignment:
| Q |
13 |
aatatcactctcacttcaaaatttcatattctttttcactattacactcttatgtttctctatcactaagtaatgtttgaacattaaacaattgtttttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35936653 |
aatatcactctcacttcaaaatttcatattctttttcactgttacactcttatgtttctctatcactaagtaatgtttgaacattaaacaattgtttttg |
35936554 |
T |
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| Q |
113 |
tttaaggagtctgataatatgaaattcagctatgaaataagtataacttaactctgaattgtttcatccttgaatcaaattcaaattttttcgaactatt |
212 |
Q |
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| T |
35936553 |
ttcaaggagtctgataatatgaaattcggctatgaaataagtataacttgacttagaattgttccatccttgaatcaaatttagattttttcgaacgatt |
35936454 |
T |
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| Q |
213 |
cgtcatttggtggaactcattaaccacttaaattcaataacttggttaa-------cactatacaactttcttttaatgttttcttaatgtgcaattcct |
305 |
Q |
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| T |
35936453 |
cgtcatttggtggaactcattaaccacttaagctcaataacttggttaacacttaacactatacaactttcttttaatgctttcttaatgtgcaattcct |
35936354 |
T |
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| Q |
306 |
ttaacaaaaattattacatattaaattacatatgacacac--aaataatattttgacataaagaat |
369 |
Q |
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| T |
35936353 |
ttaacaaaaattattacatattaaattacatatgacacacataaataagattttaacataaagaat |
35936288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 21629854 - 21629801
Alignment:
| Q |
211 |
ttcgtcatttggtggaactcattaaccacttaaattcaataacttggttaacac |
264 |
Q |
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| T |
21629854 |
ttcgtcctttggtggaactcattaaccacttgaacttaatcacttggttaacac |
21629801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 17008229 - 17008171
Alignment:
| Q |
184 |
gaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccacttaa |
243 |
Q |
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| T |
17008229 |
gaatcaaattcaaatttttctgaacaattcgt-atttggtagaactcattaaccatttaa |
17008171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 18096147 - 18096091
Alignment:
| Q |
185 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
241 |
Q |
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| T |
18096147 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
18096091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 21829280 - 21829224
Alignment:
| Q |
185 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
241 |
Q |
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| T |
21829280 |
aatcaaattcaaattttttcgaacgattcgtcgtttgatgaaggtcattaaccactt |
21829224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 33717101 - 33717032
Alignment:
| Q |
169 |
aattgtttcatccttgaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaacca |
238 |
Q |
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| T |
33717101 |
aattgtttcatccaaaaatcaaacttaaattatctcgaattattagtcatttggtggagctcattaacca |
33717032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 37853753 - 37853697
Alignment:
| Q |
185 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
241 |
Q |
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||||||||||||||| ||| |||| ||| ||||||| |||||| ||||||||||||| |
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| T |
37853753 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
37853697 |
T |
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