View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_121 (Length: 358)
Name: NF1199_low_121
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_121 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 99 - 350
Target Start/End: Complemental strand, 26833340 - 26833089
Alignment:
| Q |
99 |
gcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833340 |
gcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaatt |
26833241 |
T |
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| Q |
199 |
aaggtatctatgctacaaaactaatgagaacttttgtcaccttaannnnnnnncttccatttcggttctcttgttacttgttagacacttcagtcattta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26833240 |
aaggtatctatgctacaaaactaatgagaacttttgtcaccttaattttttttcttccattttggttctcttgttacttgttagacacttcagtcattta |
26833141 |
T |
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| Q |
299 |
tatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc |
350 |
Q |
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| T |
26833140 |
tatcggtttttcatttccgtccatcaaatatttcctaaaatgtagaataatc |
26833089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 26786550 - 26786432
Alignment:
| Q |
101 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
200 |
Q |
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||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || |
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| T |
26786550 |
aggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattcaactgacccaacaatcaa |
26786451 |
T |
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| Q |
201 |
ggtatctatgctacaaaac |
219 |
Q |
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||||| ||||||||||||| |
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| T |
26786450 |
ggtatatatgctacaaaac |
26786432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 26823425 - 26823309
Alignment:
| Q |
99 |
gcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaatt |
198 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |
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| T |
26823425 |
gcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaacaatc |
26823326 |
T |
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| Q |
199 |
aaggtatctatgctaca |
215 |
Q |
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||||||| |||||||| |
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| T |
26823325 |
aaggtatacatgctaca |
26823309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 26799334 - 26799228
Alignment:
| Q |
99 |
gcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaatt |
198 |
Q |
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|
||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || || || |
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| T |
26799334 |
gcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactgacccaaccatc |
26799235 |
T |
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| Q |
199 |
aaggtat |
205 |
Q |
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||||||| |
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| T |
26799234 |
aaggtat |
26799228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
| Q |
101 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc |
191 |
Q |
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|||| ||||| ||||||||||| ||||||||||| | |||||||| |||||||| || || || ||| |||||||||| ||||| ||||| |
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| T |
41545969 |
aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc |
41546059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
101 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
200 |
Q |
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|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
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| Q |
201 |
ggta |
204 |
Q |
| |
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|||| |
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|
| T |
41917092 |
ggta |
41917095 |
T |
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