View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_124 (Length: 350)
Name: NF1199_low_124
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_124 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 29648192 - 29648064
Alignment:
| Q |
223 |
gattctcaaatgtctc-aacaaaattccttcaaaacatcaacagtagtgcttctcttcaaatgatccatgcctttcagaatagcacttaaatctaagaac |
321 |
Q |
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| T |
29648192 |
gattctcaaatgtctccaacaaaattccttcaaaacatcaacagtagtgattctcttcaaatgatccatgccttttagaatagcacttaaatctaagaac |
29648093 |
T |
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| Q |
322 |
aaaagttaatgaaacttataaaaattcat |
350 |
Q |
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| T |
29648092 |
aaaagttaatgaaacttataaaaattcat |
29648064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 350
Target Start/End: Complemental strand, 29640170 - 29640043
Alignment:
| Q |
226 |
tctcaaatgtctc-aacaaaattccttcaaaacatc---aacagtagtgcttctcttcaaatgatccatgcctttcagaatagcacttaaatctaagaac |
321 |
Q |
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|||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
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| T |
29640170 |
tctcaaatatctccaacaaaattccttcaaaacatccccaacaacagtgcttctcttcaattgatccatgcctatcagaatagcacttaaa-ctaagaac |
29640072 |
T |
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| Q |
322 |
aaaagttaatgaaacttataaaaattcat |
350 |
Q |
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|| | |||||||||||||||||||||||| |
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| T |
29640071 |
aacatttaatgaaacttataaaaattcat |
29640043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 29648330 - 29648282
Alignment:
| Q |
85 |
gagatgaagctttcaaaattgaaacaatctccaaatcaaaatgtttcag |
133 |
Q |
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| T |
29648330 |
gagatgaggctttcaaaattgaaacaatctccaaatcaaaatgtttcag |
29648282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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