View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_125 (Length: 349)
Name: NF1199_low_125
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_125 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 100 - 317
Target Start/End: Original strand, 4686049 - 4686269
Alignment:
| Q |
100 |
ataaactggtgatttcatactcttcaatacattattcaatatgttacttgatggaggtagacctgctggatatgttgatcctgataatggttgaagttgt |
199 |
Q |
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| T |
4686049 |
ataaactggtgatttcatactcttcaatacattattcaatatgttacttgatggaggtagacctgctggatatgttgatcctgataatggttcaagttgt |
4686148 |
T |
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| Q |
200 |
ccactacaactattttttggttgattccactcctttcccctgtgttcgttcaagtcacaaaatatgataaattttgttttaat---ttattttcagcatt |
296 |
Q |
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| T |
4686149 |
ccactacaactattttttggttgattccactcctttcccctgtgttcgttcaagtcacaaaatatgattaattttgttttaatttattattttcagcatt |
4686248 |
T |
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| Q |
297 |
atggaatatacaaaaatggat |
317 |
Q |
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| T |
4686249 |
atggaatatacaaaaatggat |
4686269 |
T |
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