View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_127 (Length: 348)
Name: NF1199_low_127
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_127 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 49 - 341
Target Start/End: Complemental strand, 2104962 - 2104663
Alignment:
| Q |
49 |
tgatttctcaactccaattccagctctaatgtgtttgttagagtccacagtactatactatatagtaaaattgatcggtttgttataacaaattctgaaa |
148 |
Q |
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| T |
2104962 |
tgatttttcaactccaattccaggtctaatgtgtttgttagagtccacagtactatactatatagtaaaattgatcggtttgttataacaaattctgaaa |
2104863 |
T |
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| Q |
149 |
ccggatttcaaattttttattaaccagaataaattctttacgacaacaactatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggc |
248 |
Q |
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| T |
2104862 |
ccggatttcaaattttttattaaccagaataaattctttactacaacaactatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggc |
2104763 |
T |
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| Q |
249 |
agtaataatggctatcctatgtcaccaatgtactattcattttgaaacttg-------ttgacagaattttgaaacttgatgttgttgtgtcctatgata |
341 |
Q |
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| T |
2104762 |
agtaataatggctatcctatgtcaccaatgtactattcattttgaaacttggtgttttttgacagaattttgaaacttgatgttgttgtgtactatgata |
2104663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 2096147 - 2096001
Alignment:
| Q |
49 |
tgatttctcaactccaattccagctctaatgtgtttgttagagtccacagtacta----tactata--tagtaaaattgatcggtttgttataacaaatt |
142 |
Q |
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| T |
2096147 |
tgatttttcaactccaagtctagctctaatgtgtttgttagagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataacaaatt |
2096048 |
T |
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| Q |
143 |
ctgaaaccggatttcaaattttttattaaccagaataaattctttac |
189 |
Q |
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| T |
2096047 |
ctgaaaccggatttcaaattttttattaaccagagtaaattctttac |
2096001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 2085947 - 2085845
Alignment:
| Q |
197 |
actatggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtactattcattttgaaac |
296 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
2085947 |
actatggacagtaataaaaaccaaccatggtaaatgtaataatgagcatggcagaaataatagcaatcctatgtcaccaatgtactattcattttgaaac |
2085848 |
T |
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| Q |
297 |
ttg |
299 |
Q |
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||| |
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| T |
2085847 |
ttg |
2085845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 2052826 - 2052765
Alignment:
| Q |
115 |
aaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccaga |
176 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccaga |
2052765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 53491258 - 53491223
Alignment:
| Q |
6 |
agataccaaataaatcacttcaatttttcacaggtt |
41 |
Q |
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| T |
53491258 |
agataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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