View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_129 (Length: 345)
Name: NF1199_low_129
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_129 |
 | |
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| [»] chr2 (28 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 28)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 39216953 - 39216619
Alignment:
| Q |
11 |
cacagaccaaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216953 |
cacagaccaaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatg |
39216854 |
T |
|
| Q |
111 |
caaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39216853 |
caaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtatt |
39216754 |
T |
|
| Q |
211 |
ttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216753 |
ttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaa |
39216654 |
T |
|
| Q |
311 |
taaatatggtaatcagcgataatcacagcattgtc |
345 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39216653 |
taaatatggtaatcagcaataatcacagcattgtc |
39216619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 39396563 - 39396834
Alignment:
| Q |
36 |
acataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39396563 |
acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgtgctgagcaaccgatgcaaaaagctccaaaacttcatcttc |
39396662 |
T |
|
| Q |
136 |
accaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatca |
235 |
Q |
| |
|
| | ||||||| || ||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||| || |||| || | |||||||| |
|
|
| T |
39396663 |
atcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaagctctcaaatca |
39396762 |
T |
|
| Q |
236 |
aatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
39396763 |
tgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagc |
39396834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 39153351 - 39153059
Alignment:
| Q |
15 |
gaccaaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaa |
114 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||| ||||||| ||||||||| ||||||| |
|
|
| T |
39153351 |
gaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagcaacaaatgcaaa |
39153252 |
T |
|
| Q |
115 |
aagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttca |
214 |
Q |
| |
|
||||||||| |||||||||| | | ||||||| ||||||||||||||| ||||||| ||| |||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
39153251 |
aagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtattttct |
39153152 |
T |
|
| Q |
215 |
ctcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
| || |||| |||||||||| ||| || |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
39153151 |
tttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagttgttctagc |
39153059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 27 - 342
Target Start/End: Original strand, 39196412 - 39196727
Alignment:
| Q |
27 |
tctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaac |
126 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||| | ||||||| || | || || |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
39196412 |
tctaaattatcataccagaaactctgtttgcaaaacccaggcttccaaacagctccaccgcaatattgttcagagcaacaaatgcaaaaagctccaaaac |
39196511 |
T |
|
| Q |
127 |
ttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagat |
226 |
Q |
| |
|
|||||||||| |||||||| ||| |||| |||||||||||||||||| ||||| || ||||||||||||||||||| |||||| ||| ||||||||| | |
|
|
| T |
39196512 |
ttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttagct |
39196611 |
T |
|
| Q |
227 |
ttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||| ||| ||| || ||||||||| |
|
|
| T |
39196612 |
ttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagttgttccagcagatagatttggtaatcaa |
39196711 |
T |
|
| Q |
327 |
cgataatcacagcatt |
342 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
39196712 |
caataaccacagcatt |
39196727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 39371405 - 39371117
Alignment:
| Q |
19 |
aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagc |
118 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| || |||||||||| ||| ||||||| || |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39371405 |
aaagcatgtctacattaacataccagaagctttgttggcaaaacccatggttccaaacagctccatagctatcttgtgctcagcaacaaatgcaaaaagc |
39371306 |
T |
|
| Q |
119 |
tccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactca |
218 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||| ||||||| ||||||| ||| |
|
|
| T |
39371305 |
tccaaaagttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttca |
39371206 |
T |
|
| Q |
219 |
tgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
|||| | ||||| ||||| |||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| |||||||||||| |
|
|
| T |
39371205 |
tgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagc |
39371117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 39421095 - 39421365
Alignment:
| Q |
34 |
taacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatct |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
39421095 |
taacttaccagaaactttatttgcaaaacccagggtctcaaacaactcaactgctatcttgtgctgagcaacaaatgcaaaaagctccaacacttcatct |
39421194 |
T |
|
| Q |
134 |
tcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaat |
233 |
Q |
| |
|
||| ||| ||| ||||||| ||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
39421195 |
tcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaa---ccaaattattttcagtattttcttccatattagctttcaaat |
39421291 |
T |
|
| Q |
234 |
caaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
||| || |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39421292 |
caagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagttgttctagc |
39421365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 39138937 - 39138646
Alignment:
| Q |
15 |
gaccaaagcatttctaaattaa--cataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgca |
112 |
Q |
| |
|
||||||| ||| |||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||| ||| |
|
|
| T |
39138937 |
gaccaaaccatgtctaaattaaaacatacctgaaagtttatttgcaaaacccagggtcttaaacagttccacagctgtcttgtgctgagcaacaaatgtg |
39138838 |
T |
|
| Q |
113 |
aaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtatttt |
212 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||| || |||| |||||| |||||||| ||| ||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
39138837 |
aaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatttt |
39138738 |
T |
|
| Q |
213 |
cactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
||||||||| ||||| || || |||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
39138737 |
---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagc |
39138646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 34 - 307
Target Start/End: Original strand, 39380403 - 39380676
Alignment:
| Q |
34 |
taacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatct |
133 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| | ||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
39380403 |
taacttaccagaaactatatttgcaaaacccagggcccgaaacatctccatagctatcttgtgctgagcaaccaatgcaaaaagctccaaaatttcatct |
39380502 |
T |
|
| Q |
134 |
tcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaat |
233 |
Q |
| |
|
||| | ||||||| || |||||||||||||||||||||||| ||||| || |||||||||| ||||| || |||||| || || |||| || |||||||| |
|
|
| T |
39380503 |
tcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagctttcaaat |
39380602 |
T |
|
| Q |
234 |
caaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||| || ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
39380603 |
caagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagc |
39380676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 39472654 - 39472909
Alignment:
| Q |
15 |
gaccaaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaa |
114 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||| ||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||| |||| || |
|
|
| T |
39472654 |
gaccaaaccatatctaaattaaaatacctgaaagtttatttgcaaaacccaaggtccgaaacagttccacagctatcttgtgctgagcaacaaatgcgaa |
39472753 |
T |
|
| Q |
115 |
aagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttca |
214 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| || |||| ||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
39472754 |
gagctccaagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttct |
39472853 |
T |
|
| Q |
215 |
ctcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaagg |
270 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||| |||| | |||||||||| |
|
|
| T |
39472854 |
ttcatgttaactttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagg |
39472909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 39223991 - 39223715
Alignment:
| Q |
27 |
tctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaac |
126 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| ||||||| || | ||| || |||||| |||||||| |||||||||| |||| ||| |
|
|
| T |
39223991 |
tctaaattaacataccagaaactctgtttgcaaaacccaggcatccaaacagctccacagcaattttgtgcagagcaacaaatgcaaaaagatccagaac |
39223892 |
T |
|
| Q |
127 |
ttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagat |
226 |
Q |
| |
|
|||||||||| |||| ||| ||| |||| |||||||||||||||||| |||||||| |||||||||||||| |||| |||||| || ||||||| | |
|
|
| T |
39223891 |
ttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgttttct |
39223792 |
T |
|
| Q |
227 |
ttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttc |
303 |
Q |
| |
|
|| |||||| |||||||||||||||||| |||||| ||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
39223791 |
tttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttc |
39223715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 39604605 - 39604321
Alignment:
| Q |
18 |
caaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaag |
117 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||| ||||||||||| || ||||||| || | ||||||||||| ||||||| || | | ||||| |
|
|
| T |
39604605 |
caaaacatttctaaactaacataccagaagctttatcggcaaaacccagagttccaaacagctctacagctatcttgtcctgagcagcaaactcgaaaag |
39604506 |
T |
|
| Q |
118 |
ctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactc |
217 |
Q |
| |
|
|| ||||||||||||||| | ||||||| | |||||||||||||||||| ||| || |||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
39604505 |
ctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtattttcactt |
39604406 |
T |
|
| Q |
218 |
atgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgtt |
302 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
39604405 |
atgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtt |
39604321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 277
Target Start/End: Original strand, 44895028 - 44895259
Alignment:
| Q |
46 |
aactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaa |
145 |
Q |
| |
|
|||||||| ||||||||| |||||| ||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
44895028 |
aactttatgtgcaaaaccgagggtccgaaaaagttccacagctatcttgtgctgagcaacaaatgcaaaaagctccaaaacttcgccttcatcgaaagaa |
44895127 |
T |
|
| Q |
146 |
gcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagct |
245 |
Q |
| |
|
| || |||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||| | | ||||||| ||| || | | |||||||| |
|
|
| T |
44895128 |
gtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagct |
44895227 |
T |
|
| Q |
246 |
tcaatgcttcttctcttacacaaggtttaata |
277 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |
|
|
| T |
44895228 |
tcaatgcttgttctcttacacgaggtttaata |
44895259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 92 - 342
Target Start/End: Original strand, 39205709 - 39205959
Alignment:
| Q |
92 |
ttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccg |
191 |
Q |
| |
|
|||||| |||||||| |||| |||| ||| ||||||||||||| | |||||||| ||| |||| |||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
39205709 |
ttgtgcagagcaacaaatgccaaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccg |
39205808 |
T |
|
| Q |
192 |
ccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagatttt |
291 |
Q |
| |
|
||| |||||||| ||||||||| |||| |||| |||||| |||||||||||||||||||||| |||||| |||||||||| |||| ||||||||| | |
|
|
| T |
39205809 |
ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattct |
39205908 |
T |
|
| Q |
292 |
catcagttgttctagcgaataaatatggtaatcagcgataatcacagcatt |
342 |
Q |
| |
|
|||||||||||| ||| ||| || ||||||||||| ||||||||| |||| |
|
|
| T |
39205909 |
catcagttgttcaagcagatatatttggtaatcagcaataatcacaacatt |
39205959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 39478206 - 39478420
Alignment:
| Q |
36 |
acataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttc |
135 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
39478206 |
acataccaaaaactttatttgcgaaacccagggtctcaaacaactccatagctgtcttgtgttgagcaacagatgcaaaaa-ctccaaaacttcaccttc |
39478304 |
T |
|
| Q |
136 |
accaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatca |
235 |
Q |
| |
|
| ||||||| || |||||||||||||||||||||||| |||||| | ||||| ||| ||||||||| ||||||||| || |||| || |||||||||| |
|
|
| T |
39478305 |
ttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaagctttcaaatca |
39478404 |
T |
|
| Q |
236 |
aatgctagcttcaatg |
251 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39478405 |
tgtgctagcttcaatg |
39478420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 345
Target Start/End: Original strand, 39387404 - 39387714
Alignment:
| Q |
35 |
aacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatctt |
134 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| | |||| || || | ||| || | |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39387404 |
aacatacctgaaactctgtttgcaaaacccagacttccaaatagctccacagcaatttcgtgcatagcaacaaatgcaaaaagctccaaaacttcatctt |
39387503 |
T |
|
| Q |
135 |
caccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatc |
234 |
Q |
| |
|
| ||||| || ||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||||| ||| ||||| |
|
|
| T |
39387504 |
cgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttttaaatc |
39387603 |
T |
|
| Q |
235 |
aaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcagcgataatc |
334 |
Q |
| |
|
| ||||||||||||||||||| | ||||||||| || ||| | |||||| || ||||||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
39387604 |
acgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagttgttctagcatatggatttggtaatcagcaataatc |
39387703 |
T |
|
| Q |
335 |
acagcattgtc |
345 |
Q |
| |
|
|||| |||||| |
|
|
| T |
39387704 |
acagaattgtc |
39387714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 303
Target Start/End: Complemental strand, 39099869 - 39099591
Alignment:
| Q |
25 |
tttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaa |
124 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||| | |||| || | | ||||||||||||||||||| || | ||||||||| ||| |
|
|
| T |
39099869 |
tttctaaactaacataccagaagctttatcggcaaaacccagaattccaaagagctttacagctatcttgtgctgagcagcaaacccaaaaagctttaaa |
39099770 |
T |
|
| Q |
125 |
acttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttag |
224 |
Q |
| |
|
|||||||||||| ||||||||| | ||||| ||||||||||| ||| || |||||||| |||||||||| ||||||| |||| ||||||| || || |
|
|
| T |
39099769 |
acttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagtttcacttataaaag |
39099670 |
T |
|
| Q |
225 |
atttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttc |
303 |
Q |
| |
|
||||||| | || ||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
39099669 |
atttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttc |
39099591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 39412941 - 39413174
Alignment:
| Q |
35 |
aacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatctt |
134 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
39412941 |
aacataccagaaacttt--ttgcaaaacccagggttccaaacagcttcgcagctatcttgtgttgagcaacaaatgcaaaaagctccaagatttcatctt |
39413038 |
T |
|
| Q |
135 |
caccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatc |
234 |
Q |
| |
|
|| | ||| ||| |||||||||| ||| ||||||||||| ||||||| |||||||||||||| |||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
39413039 |
catccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttcaaatc |
39413138 |
T |
|
| Q |
235 |
aaatgctagcttcaatgcttcttctcttacacaaggttt |
273 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
39413139 |
aagtgctagcttcaatgcttctt---ttacacaaggttt |
39413174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 307
Target Start/End: Complemental strand, 44625024 - 44624782
Alignment:
| Q |
65 |
agggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattg |
164 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||| ||||||||| | |||||||||||| ||||| ||| | |||||||||||| | |
|
|
| T |
44625024 |
agggtctcaaacagttcttcagccatcttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcg |
44624925 |
T |
|
| Q |
165 |
acaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttac |
264 |
Q |
| |
|
|||||| || ||||| ||||||||| ||||| |||||| ||||||||| ||||||||| |||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
44624924 |
acaaaatcaatagaaatccgagaacctccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttac |
44624825 |
T |
|
| Q |
265 |
acaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
44624824 |
acaaggtttaatatttggtgagattgtcatcagtttttctagc |
44624782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 2362968 - 2362683
Alignment:
| Q |
18 |
caaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaag |
117 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||| || | || ||||||||| |||||| || | ||||||| |
|
|
| T |
2362968 |
caaaacatttctaaactaacataccagaaactttatgtgccaaacccatagtcccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaag |
2362869 |
T |
|
| Q |
118 |
ctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactc |
217 |
Q |
| |
|
|| |||| |||||||||| | ||||||| |||||||||||||||||||| ||| || | ||| || ||||| | || | ||||| ||||||||| | |
|
|
| T |
2362868 |
ctttaaaatttcatcttcatcgaaagaagaaaccaatccataaattgacagaaggagcaaaaaccccagaactggcactggattttcagtattttcgcca |
2362769 |
T |
|
| Q |
218 |
atgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttc |
303 |
Q |
| |
|
|||| || ||||| | || ||||||||||| ||||||||||| ||| |||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
2362768 |
atgtaagctttcagtttaagtgctagcttcattgcttcttctcgcacatgaggtttaacatgtggtgagattctcatcagttgttc |
2362683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 289
Target Start/End: Original strand, 39425457 - 39425697
Alignment:
| Q |
49 |
tttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagca |
148 |
Q |
| |
|
||||| ||||||||||| || | ||||||| || | ||||| |||||||||| |||| | | ||||||| ||||||||| ||||| | ||||||| | |
|
|
| T |
39425457 |
tttatctgcaaaacccatggccccaaacagctctacagctaagttgtgctgagaaacaagttcgaaaagcttcaaaacttcttcttcgtcgaaagaagga |
39425556 |
T |
|
| Q |
149 |
accaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttca |
248 |
Q |
| |
|
|||| |||||||||||||| ||| || |||||||| ||||| ||| ||||||| | | |||| ||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
39425557 |
accagtccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttcattgttttgacttatgttagctttcaaatcaagtgctaacttca |
39425656 |
T |
|
| Q |
249 |
atgcttcttctcttacacaaggtttaatatgaggtgagatt |
289 |
Q |
| |
|
|||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
39425657 |
ttgcttcttcttttacatcaggtctaatatccggtgagatt |
39425697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 111 - 298
Target Start/End: Original strand, 39188740 - 39188927
Alignment:
| Q |
111 |
caaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtatt |
210 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| |||||| ||||||||||| | ||| || |||||||| |||||| ||||||||||| | |||| |
|
|
| T |
39188740 |
caaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccattatt |
39188839 |
T |
|
| Q |
211 |
ttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagt |
298 |
Q |
| |
|
||| ||||||||| ||| ||||||| |||||| |||| ||| || ||||||||| ||||||||| | |||||||||| |||||||| |
|
|
| T |
39188840 |
ttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagt |
39188927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 299
Target Start/End: Original strand, 39493363 - 39493613
Alignment:
| Q |
49 |
tttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagca |
148 |
Q |
| |
|
||||| ||||||||||| || | ||||||| || | | | || |||||||||| |||| | |||| |||| ||||| ||||| ||| | ||||| | | |
|
|
| T |
39493363 |
tttatctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctcatcctcatcgaaagatgga |
39493462 |
T |
|
| Q |
149 |
accaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttca |
248 |
Q |
| |
|
|||| |||||||||||||| ||| || |||||||| |||||||| | ||||||| || |||| ||| ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
39493463 |
accagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttca |
39493562 |
T |
|
| Q |
249 |
atgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagtt |
299 |
Q |
| |
|
|||||||||| ||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
39493563 |
ttgcttcttcttttacatgaggtctaatatctggtgagattttcctcagtt |
39493613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 44615706 - 44615406
Alignment:
| Q |
19 |
aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgt--------gctga-gcaacagat |
109 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||||||||||| ||| | |||| | | ||||||||||| || || |||||| | |
|
|
| T |
44615706 |
aaagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcctacacagcttcacagctatcttgtattcagcagcagacgcaacataa |
44615607 |
T |
|
| Q |
110 |
gcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtat |
209 |
Q |
| |
|
||||||| || || |||||||||||| |||| || ||||||||| ||||| || |||| || ||||| || ||| || |||||||||||| |||| |
|
|
| T |
44615606 |
gcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtat |
44615507 |
T |
|
| Q |
210 |
tttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatga---ggtgagattttcatcagttgttctag |
306 |
Q |
| |
|
|||| ||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||||| ||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
44615506 |
tttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctcttacacaagatttaataatatttggtgagattatcatcagttgttctag |
44615407 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
|
| |
|
|
| T |
44615406 |
c |
44615406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 39 - 299
Target Start/End: Complemental strand, 39144864 - 39144604
Alignment:
| Q |
39 |
taccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcacc |
138 |
Q |
| |
|
||||||| | |||||||||||| |||| || | ||||||| || | |||||| | |||||||| |||| | ||||||||| ||||| ||||||||| |
|
|
| T |
39144864 |
taccagatattttatttgcaaatcccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccaaaaagctttaaaacatcatcttcatt |
39144765 |
T |
|
| Q |
139 |
aaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaat |
238 |
Q |
| |
|
||||| | | ||| ||||||||||||| ||| || |||||||| |||| |||| ||||||| || |||| ||| || || | ||||||||||| | |
|
|
| T |
39144764 |
gaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtgttttgacttatattggctttcaaatcaagt |
39144665 |
T |
|
| Q |
239 |
gctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagtt |
299 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
39144664 |
gctagcttcattgcttcttcttttacatgaggtttaatatctagtgagattttcctcagtt |
39144604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 39126584 - 39126490
Alignment:
| Q |
209 |
ttttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttc |
303 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
39126584 |
ttttcacttatgttagatttcaatttaagagctagcttcattgcttcttctcttacacgaggttcaatatttagtgagattctcatcagttgttc |
39126490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 39452304 - 39452264
Alignment:
| Q |
27 |
tctaaattaacataccagaaactttatttgcaaaacccagg |
67 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39452304 |
tctaaattaacataccagaaaatttatttgcaaaacccagg |
39452264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 39503952 - 39504063
Alignment:
| Q |
35 |
aacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatctt |
134 |
Q |
| |
|
|||||||| ||| |||||| ||||||||| || || ||||||| || | |||||||| |||||||||| || | ||||||||| ||||||||||||| |
|
|
| T |
39503952 |
aacataccggaagctttatctgcaaaaccaagagttccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatctt |
39504051 |
T |
|
| Q |
135 |
caccaaaagaag |
146 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
39504052 |
catcgaaagaag |
39504063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 31606534 - 31606606
Alignment:
| Q |
152 |
aatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttag |
224 |
Q |
| |
|
||||||||||||||| ||| || |||||||| |||||| ||||||||||| || ||||||| ||||||||| |
|
|
| T |
31606534 |
aatccataaattgacggaaggagtagaaaaccaagaaccaccaaagaatttctattattttctttcatgttag |
31606606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 345
Target Start/End: Complemental strand, 33562569 - 33562251
Alignment:
| Q |
27 |
tctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaac |
126 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| | |||||||| || | || || |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
33562569 |
tctaaattaacataccagaaactctgtttgcaaaacccaggctttcaaacagctccacggcaattttgtgcagagcaacaaatgcaaaaagctccaaaac |
33562470 |
T |
|
| Q |
127 |
ttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagat |
226 |
Q |
| |
|
|||||||||| |||||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||| || || ||||||||| ||||||||| | |
|
|
| T |
33562469 |
ttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttagct |
33562370 |
T |
|
| Q |
227 |
ttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||| ||||||||||||| || ||| || ||||||||| |
|
|
| T |
33562369 |
ttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagttgttccagaagatagatttggtaatcaa |
33562270 |
T |
|
| Q |
327 |
cgataatcacagcattgtc |
345 |
Q |
| |
|
| ||||| ||| ||||||| |
|
|
| T |
33562269 |
caataatgacaacattgtc |
33562251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 307
Target Start/End: Complemental strand, 17060914 - 17060646
Alignment:
| Q |
39 |
taccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcacc |
138 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||| || | || ||||||||||| |||||||||||||||||| ||||| |||||||||| | | |
|
|
| T |
17060914 |
taccagacactttatttgcaaaacctagtttctcaaacagctccacagatatcttgtgctcagcaacagatgcaaaaagatccaagacttcatcttgatc |
17060815 |
T |
|
| Q |
139 |
aaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaat |
238 |
Q |
| |
|
|||| ||| || ||||||||||| ||||| | || ||||| ||||||||| |||| |||| || ||||||| | | ||||||| |||||| ||| | |
|
|
| T |
17060814 |
aaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatattcagtatttgcttttatgttagctttcaactcatgt |
17060715 |
T |
|
| Q |
239 |
gctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
17060714 |
gctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagttgttctagc |
17060646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 35 - 307
Target Start/End: Complemental strand, 19809172 - 19808903
Alignment:
| Q |
35 |
aacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatctt |
134 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
19809172 |
aacatacctgaaagtttatttgcaaaacccagggtctgaaacagttccacggctgtcttgtgctgagcaacaaatgcgaaaagctccaagacttcatctt |
19809073 |
T |
|
| Q |
135 |
caccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatc |
234 |
Q |
| |
|
|| ||||| ||| || |||| |||||| |||||||||||| |||||||| |||||| ||| |||||||| |||| ||| ||||||||| ||||||||| |
|
|
| T |
19809072 |
catcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtacttt---tcatgttagctttcaaatc |
19808976 |
T |
|
| Q |
235 |
aaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagc |
307 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| |
|
|
| T |
19808975 |
aagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagc |
19808903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 16114662 - 16114329
Alignment:
| Q |
11 |
cacagaccaaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatg |
110 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||| |||||||||||||||| |||||||||||||| || ||| || ||||||||||||||||||||| |
|
|
| T |
16114662 |
cacagaccaaaacatt-ctaaattaacgtaccagaagctttatttgcaaaaccgagggtctcaaacagctccataactgtcttgtgctgagcaacagatg |
16114564 |
T |
|
| Q |
111 |
caaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgagaaccgccaaagaatttttagtatt |
210 |
Q |
| |
|
||||||||||||||||||| || | | ||| ||| | ||||||||||| |||||||||||| | |||||| | ||| ||| | |||||||||||||| |
|
|
| T |
16114563 |
caaaaagctccaaaacttcgcatttatcgaaataagttagcaatccataaactgacaaaagcagcataaaaccaacaacagccgatgaatttttagtatt |
16114464 |
T |
|
| Q |
211 |
ttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaa |
310 |
Q |
| |
|
|| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||| ||| ||||||||| ||||| | | |
|
|
| T |
16114463 |
ctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatcagttcttctaacaga |
16114364 |
T |
|
| Q |
311 |
taaatatggtaatcagcgataatcacagcattgtc |
345 |
Q |
| |
|
|| || ||| | ||| | ||||||||||||||||| |
|
|
| T |
16114363 |
tagatgtggcattcatcaataatcacagcattgtc |
16114329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 88 - 306
Target Start/End: Complemental strand, 45343184 - 45342966
Alignment:
| Q |
88 |
tatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccgaga |
187 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||||||| || |||| ||| ||||||||||| ||| |||||||| ||| |
|
|
| T |
45343184 |
tatcttgtgctgaacaacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaaga |
45343085 |
T |
|
| Q |
188 |
accgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgaga |
287 |
Q |
| |
|
|| ||| || |||| ||||||| | ||| ||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
45343084 |
acgttcaatgatttttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaaga |
45342985 |
T |
|
| Q |
288 |
ttttcatcagttgttctag |
306 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
45342984 |
ttctcatcagttgttctag |
45342966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 268
Target Start/End: Complemental strand, 44730337 - 44730154
Alignment:
| Q |
85 |
agctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccg |
184 |
Q |
| |
|
|||||||||||| | | |||||||||| ||||||| | ||||||||| || |||| ||| || ||||| |||||| | ||||| || ||||| ||| |
|
|
| T |
44730337 |
agctatcttgtgttcaacaacagatgcgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccg |
44730238 |
T |
|
| Q |
185 |
agaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaa |
268 |
Q |
| |
|
|||||| || ||||||||| ||||||||| | ||||||| |||||| ||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
44730237 |
agaacctcctaagaattttcagtattttcttttatgttagctttcaactcatgtgctagcttcaaagcttcatctcttacacaa |
44730154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 44949954 - 44950037
Alignment:
| Q |
184 |
gagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacaca |
267 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || ||| ||||||| ||| |||||||||||| ||||| ||||| ||||| |
|
|
| T |
44949954 |
gagaacctccaaagaatttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca |
44950037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 51576206 - 51575989
Alignment:
| Q |
86 |
gctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccga |
185 |
Q |
| |
|
||||| ||||||||||||||| || ||||| || ||||| |||||||| | ||||| ||| |||||||||||||||||||| ||| || ||| |||| | |
|
|
| T |
51576206 |
gctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatctttatcaaaataaggaaccaatccataaattgacagaaggagcagataaccaa |
51576107 |
T |
|
| Q |
186 |
gaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtga |
285 |
Q |
| |
|
||||| ||| ||||||| |||||||||||| |||| | |||||||| | |||| ||||||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
51576106 |
gaaccaccacggaattttcagtattttcactaatgtacgctttcaaattgaggactagtttcaatgcttcttcttgtacatgaggtttgatatgtggtga |
51576007 |
T |
|
| Q |
286 |
gattttcatcagttgttc |
303 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
51576006 |
gattctcattagttgttc |
51575989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 33152333 - 33152229
Alignment:
| Q |
86 |
gctatcttgtgctgagcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagcaaccaatccataaattgacaaaagcagaagaaaaccga |
185 |
Q |
| |
|
||||||||||| |||||||| | ||||||||| ||||||||||||||| ||||||| | |||||| ||||||||||||| ||| || |||||||| | |
|
|
| T |
33152333 |
gctatcttgtgttgagcaacgattccaaaaagctttaaaacttcatcttcatcaaaagatgaaaccaacccataaattgacagaagtagcagaaaaccca |
33152234 |
T |
|
| Q |
186 |
gaacc |
190 |
Q |
| |
|
||||| |
|
|
| T |
33152233 |
gaacc |
33152229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 33152182 - 33152105
Alignment:
| Q |
268 |
aggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcagcgataatcacagcattgtc |
345 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| ||| ||| ||| ||| ||||| | ||||| |||||||||| |
|
|
| T |
33152182 |
aggtttaacatgtggtgagattctcatcagttgttcgagcaaatcaatgtggaaatcatcaataattgcagcattgtc |
33152105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 5934 - 6017
Alignment:
| Q |
184 |
gagaaccgccaaagaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacaca |
267 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || ||| ||||||| ||| |||||||||||| ||||| ||||| ||||| |
|
|
| T |
5934 |
gagaacctccaaagaatttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctctaacaca |
6017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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