View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_13 (Length: 635)

Name: NF1199_low_13
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_13
NF1199_low_13
[»] chr2 (15 HSPs)
chr2 (29-553)||(2641227-2641756)
chr2 (236-338)||(25626469-25626571)
chr2 (243-338)||(25626319-25626414)
chr2 (236-326)||(44068845-44068935)
chr2 (158-213)||(39420195-39420252)
chr2 (257-329)||(32294594-32294666)
chr2 (249-305)||(34141632-34141688)
chr2 (258-329)||(29877100-29877171)
chr2 (160-213)||(36278305-36278360)
chr2 (248-329)||(2889111-2889192)
chr2 (248-329)||(20061130-20061211)
chr2 (258-338)||(37230557-37230637)
chr2 (236-311)||(30549082-30549157)
chr2 (242-296)||(41890055-41890109)
chr2 (242-311)||(9950292-9950361)
[»] chr8 (11 HSPs)
chr8 (238-338)||(39699631-39699731)
chr8 (248-338)||(31313303-31313393)
chr8 (243-313)||(45244700-45244770)
chr8 (236-311)||(8114367-8114442)
chr8 (242-329)||(8867187-8867274)
chr8 (248-338)||(6530302-6530392)
chr8 (249-329)||(5493362-5493442)
chr8 (250-338)||(31592423-31592511)
chr8 (242-312)||(14042076-14042146)
chr8 (158-213)||(6530408-6530465)
chr8 (173-213)||(31313409-31313450)
[»] chr6 (5 HSPs)
chr6 (268-326)||(3787436-3787494)
chr6 (236-305)||(2614364-2614433)
chr6 (242-329)||(30249149-30249236)
chr6 (242-311)||(2831381-2831450)
chr6 (236-329)||(6469613-6469706)
[»] chr1 (11 HSPs)
chr1 (236-329)||(11018005-11018098)
chr1 (257-329)||(5799823-5799895)
chr1 (237-311)||(36012480-36012554)
chr1 (242-329)||(1035573-1035660)
chr1 (242-329)||(15281383-15281470)
chr1 (267-338)||(16394821-16394892)
chr1 (236-311)||(16583178-16583253)
chr1 (242-329)||(25366740-25366827)
chr1 (242-296)||(4084736-4084790)
chr1 (248-326)||(29033013-29033091)
chr1 (173-213)||(11017960-11018001)
[»] scaffold0328 (1 HSPs)
scaffold0328 (242-326)||(12415-12499)
[»] chr7 (5 HSPs)
chr7 (242-338)||(32786786-32786882)
chr7 (158-205)||(26852605-26852654)
chr7 (242-323)||(28337215-28337296)
chr7 (173-213)||(45837910-45837951)
chr7 (174-209)||(28337310-28337346)
[»] chr4 (10 HSPs)
chr4 (242-338)||(42051181-42051277)
chr4 (263-316)||(26546028-26546081)
chr4 (242-338)||(27918405-27918501)
chr4 (236-338)||(22019385-22019487)
chr4 (257-326)||(1961618-1961687)
chr4 (158-213)||(30033486-30033543)
chr4 (158-213)||(29508766-29508823)
chr4 (248-329)||(36989838-36989919)
chr4 (174-213)||(36989936-36989976)
chr4 (242-294)||(39260037-39260089)
[»] chr3 (13 HSPs)
chr3 (243-338)||(17587052-17587147)
chr3 (242-329)||(47006601-47006688)
chr3 (158-213)||(39430362-39430419)
chr3 (242-338)||(33791475-33791571)
chr3 (236-311)||(4539879-4539954)
chr3 (263-329)||(25134177-25134243)
chr3 (248-313)||(47499447-47499512)
chr3 (173-213)||(18030090-18030131)
chr3 (243-312)||(53741346-53741415)
chr3 (242-338)||(13637886-13637982)
chr3 (269-329)||(19961139-19961199)
chr3 (242-314)||(28787690-28787762)
chr3 (242-326)||(47849993-47850077)
[»] chr5 (6 HSPs)
chr5 (242-327)||(41144650-41144735)
chr5 (242-294)||(16627328-16627380)
chr5 (258-338)||(26105005-26105085)
chr5 (258-311)||(10523678-10523731)
chr5 (236-309)||(29557497-29557570)
chr5 (159-213)||(29557574-29557630)
[»] scaffold0542 (1 HSPs)
scaffold0542 (245-338)||(4511-4604)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 553
Target Start/End: Complemental strand, 2641756 - 2641227
Alignment:
Q  29 aaaaagaagtcacgtttatcacataatcttttttgttgaaggcatttatttcaaattcttcttgtatagactgattattggtatgatcaagtcagtatcg 128  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2641756 aaaaagaagtcacgtttatcacataatattttttgttgaaggcatttatttcaaattcttcttgtatagactgattattggtatgatcaagtcagtatca 2641657  T
Q  129 agtatctgtatcacgnnnnnnnnnnn--tttacttgtgccctaagacacatgttaaggaactaaaaagagcaactttgcattggaaannnnnnnnnnnnn 226  Q
    ||||||||||| ||              || |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||                 
T  2641656 agtatctgtatgactaagaaaaaaaaaattaacttgtgccctaaggcacatgttaaggaatcaaaaagagcaactttgcattggaaattttttttttttt 2641557  T
Q  227 nnn---acaaagtgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggca 323  Q
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  2641556 tttttgacaaagtgatactttaatttttaaaatgttgactgcacgacttttcatacgtatatttttataatgatttctttaacatgtgtccttgagggca 2641457  T
Q  324 caagttggtatttgcnnnnnnnnnnntatatatatgaataagaatgtgctggacacttatttcctcgtgtcttttcaaatgagaacatttcatacatagg 423  Q
    |||||||||||||||           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2641456 caagttggtatttgccaaatatata-tatatatatgtataagaatgtgctggacacttatttcctcatgtcttttcaaatgagaacatttcatacatagg 2641358  T
Q  424 tcaagcatgcatatataacttgacaaccctaaaaagtgtcaaaagtagattcaattaagggtagagcctgtc-agtccaggtatggaataatatgacaca 522  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  2641357 tcaaggatgcatatataacttgacaaccctaaaaagtgtcaaaagtacattcaattaagggtagagcctgtcaagtcttggtatggaataatatgacaca 2641258  T
Q  523 ggcctatgtcaatgcaatttgatagtataat 553  Q
    |||||||||||||||||||||||||||||||    
T  2641257 ggcctatgtcaatgcaatttgatagtataat 2641227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 25626571 - 25626469
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatt 335  Q
    ||||| ||||| |||||| | ||||| | |||||||||| ||||||||||||  ||||||| ||||||||||||||  || ||||||||||||| | |||    
T  25626571 tgataatttaacttttaagaagttgactacacgacttttgatacgtatatttcaataataagttctttaacatgtgctcttgagggcacaagttagcatt 25626472  T
Q  336 tgc 338  Q
    |||    
T  25626471 tgc 25626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 25626319 - 25626414
Alignment:
Q  243 ttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||| |||||| | ||||| || ||||||||| |||||||||||| |||||||| ||| |||||||||||  | ||||||||||||| | ||||||    
T  25626319 ttaacttttaagaagttgaatgtacgacttttgatacgtatatttctataataagttccttaacatgtgttattgagggcacaagttagcatttgc 25626414  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 44068845 - 44068935
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    ||||| ||||| |||||| | |||||||||||||||||| |||| ||||||| |||||| | ||| |||||||||||| | ||| ||||||    
T  44068845 tgataatttaacttttaagaagttgattgcacgacttttgatacatatatttctataatgaattccttaacatgtgtctttgagagcacaa 44068935  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 39420195 - 39420252
Alignment:
Q  158 acttgtgccct-aagacacatgttaaggaac-taaaaagagcaactttgcattggaaa 213  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  39420195 acttgtgcccttaaggcacatgttaaggaacctaaaaagagcaactttgcattggaaa 39420252  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 32294594 - 32294666
Alignment:
Q  257 gttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||||||||| |||| ||||||| |||||| | ||| |||||||||| ||| |||||||||||||    
T  32294594 gttgaatgcacgacttttaatacatatatttctataatgagttccttaacatgtgcccttgagggcacaagtt 32294666  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 34141688 - 34141632
Alignment:
Q  249 tttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaa 305  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||  |||||||    
T  34141688 tttaaaaagttgaatgcacgacttttaatacgtatatttttataataaggtctttaa 34141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 29877100 - 29877171
Alignment:
Q  258 ttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||| |||||||||||| |||| | |||||||||||| | |||||||||||||||| | || ||||||||||    
T  29877100 ttgactgcacgacttttaatacatttatttttataatgagttctttaacatgtgtctttgaaggcacaagtt 29877171  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 36278305 - 36278360
Alignment:
Q  160 ttgtgccctaaga-cacatgttaaggaac-taaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  36278305 ttgtgccctaagaacacatgttaaggaacctaaaaagagcaactttgtattggaaa 36278360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 2889192 - 2889111
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||| | ||||| || |||| |||| ||| || |||||||||||||| ||| |||||||||| ||| |||||||||||||    
T  2889192 ttttaagaagttgaatgtacgaattttgatatgtgtatttttataataagttcattaacatgtgcccttgagggcacaagtt 2889111  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 20061130 - 20061211
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||| | ||||| ||||| |||||| |||||||||||| |||||| | ||| ||| |||||| ||| |||||||||||||    
T  20061130 ttttaagaagttgaatgcacaacttttgatacgtatatttctataatgagttccttagcatgtgcccttgagggcacaagtt 20061211  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 37230637 - 37230557
Alignment:
Q  258 ttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||| |||| ||||||| |||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| | ||||||    
T  37230637 ttgaatgcatgacttttgatacatatatttatataatgatttcctttacatgtgtccttgaaggcacaagttagcatttgc 37230557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 30549157 - 30549082
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    ||||| |||||  ||||| | |||||||||||||||||| |||||||||||| |||||  | ||| ||||||||||    
T  30549157 tgataatttaacgtttaagaagttgattgcacgacttttgatacgtatatttctataaagagttccttaacatgtg 30549082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 41890055 - 41890109
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataa 296  Q
    |||||||||||| | ||||| |||||||||||| || ||||||||| ||||||||    
T  41890055 tttaatttttaagaagttgaatgcacgacttttgatgcgtatatttctataataa 41890109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 9950361 - 9950292
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    ||||| |||| ||| ||||| ||||||||||||  ||||||||||| |||||||| ||| |||| |||||    
T  9950361 tttaactttttaaaagttgactgcacgacttttagtacgtatatttctataataaattccttaatatgtg 9950292  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 338
Target Start/End: Original strand, 39699631 - 39699731
Alignment:
Q  238 atactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttg 337  Q
    ||||||||| |||||||| ||| | |||||||||||| |||||||||||||||||||||  || |||||||||||||| || | |||||||| | |||||    
T  39699631 atactttaacttttaaaaagttaaatgcacgacttttgatacgtatatttttataataaactccttaacatgtgtccttgaagacacaagttagcatttg 39699730  T
Q  338 c 338  Q
    |    
T  39699731 c 39699731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 31313393 - 31313303
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||||||| ||||| |||| ||||||| |||||||||||| |||||| | ||| |||||||||| ||| ||||||||||||| | ||||||    
T  31313393 ttttaaaaagttgaatgcatgacttttgatacgtatatttctataatgacttccttaacatgtgcccttgagggcacaagttagcatttgc 31313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 45244770 - 45244700
Alignment:
Q  243 ttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtc 313  Q
    |||||| |||||| ||||| |||||||||||| |||||||||||| |||||| | ||| ||||||||||||    
T  45244770 ttaattattaaaaagttgaatgcacgacttttaatacgtatatttctataatgagttcattaacatgtgtc 45244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 8114367 - 8114442
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    ||||| ||||||||||||||  |||| |||||||||||| |||| |||||||||||||| | ||  ||||||||||    
T  8114367 tgataatttaatttttaaaaaattgactgcacgacttttaatacatatatttttataatgagtttcttaacatgtg 8114442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 8867274 - 8867187
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||||||||| | ||||| ||||| |||||| || ||||||||| |||||| | |||||||||||||| |||  | ||||||||||    
T  8867274 tttaatttttaagaagttgaatgcacaacttttgatgcgtatatttctataatgagttctttaacatgtgcccttcaaggcacaagtt 8867187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 6530392 - 6530302
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||||| | ||||| |||||||||||| || | ||||||| | |||||| ||| |||||||||| ||| ||||||||||||| | ||||||    
T  6530392 ttttaagaagttgaatgcacgactttttatgcttatatttctttaataagttccttaacatgtgcccttgagggcacaagttagcatttgc 6530302  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 5493362 - 5493442
Alignment:
Q  249 tttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||||| ||||| |||||||||||| || ||| ||||| |||||| | ||  |||||||||| ||| |||||||||||||    
T  5493362 tttaaaaagttgaatgcacgacttttgatgcgtgtatttctataatgactttcttaacatgtgcccttgagggcacaagtt 5493442  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 31592423 - 31592511
Alignment:
Q  250 ttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||||| ||||| |||||||||||| |||||||| ||||| |||| | ||| |||||||||||  | || |||| ||||| ||||||||    
T  31592423 ttaaaaagttgaatgcacgacttttaatacgtatttttttgtaatgaattccttaacatgtgtatttgaaggcataagttagtatttgc 31592511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 14042146 - 14042076
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgt 312  Q
    |||||||||||||| ||||| ||||| | |||| |||||| ||||||||||| || ||| |||| ||||||    
T  14042146 tttaatttttaaaaagttgaatgcacaatttttaatacgtttatttttataacaacttccttaatatgtgt 14042076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 6530465 - 6530408
Alignment:
Q  158 acttgtgccctaag-acacatgttaaggaact-aaaaagagcaactttgcattggaaa 213  Q
    ||||||| |||||| |||||||||||| |||  |||||||||||||||||||||||||    
T  6530465 acttgtgtcctaaggacacatgttaagcaacccaaaaagagcaactttgcattggaaa 6530408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 31313450 - 31313409
Alignment:
Q  173 cacatgttaaggaa-ctaaaaagagcaactttgcattggaaa 213  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  31313450 cacatgttaagcaatctaaaaagagcaactttgcattggaaa 31313409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 3787494 - 3787436
Alignment:
Q  268 gacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  3787494 gacttttaatacgtatatttttataataagttctttaacatgtgtccttgagggcacaa 3787436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 2614364 - 2614433
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaa 305  Q
    ||||| ||||| |||| | | ||||| |||||||||||| ||||||||||||||||||||| || |||||    
T  2614364 tgatattttaactttttagaagttgaatgcacgacttttgatacgtatatttttataataagttttttaa 2614433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 30249236 - 30249149
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||| | ||||| ||||||| |||| |||| ||||||| |||||| | ||| |||||||||||| |  ||||||||||||    
T  30249236 tttaacttttaagaagttgactgcacgaattttgatacctatatttctataatgagttccttaacatgtgtcattaagggcacaagtt 30249149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 2831450 - 2831381
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    |||||||||||| | ||||| |||||||| | | || | ||||||| |||||||| ||||||||||||||    
T  2831450 tttaatttttaagaagttgaatgcacgacctgtgatgcatatatttctataataaattctttaacatgtg 2831381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 6469613 - 6469706
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||||||||| | ||||| |||||||||||| |||  ||||||| |||||| | ||| ||||||| || | | ||||| |||||||    
T  6469613 tgataatttaatttttaagaagttgactgcacgacttttaataaatatatttctataatgaattccttaacatatgccattgagggtacaagtt 6469706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 11018005 - 11018098
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| ||||| |||||| | ||||| |||||||||||| |||||||||||| |||||||| ||| |||||||||| ||| ||| |||||||||    
T  11018005 tgataatttaacttttaagaagttgactgcacgacttttaatacgtatatttctataataagttccttaacatgtgcccttgagagcacaagtt 11018098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 5799823 - 5799895
Alignment:
Q  257 gttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| ||||| |||||| ||| ||||||||||||||||| ||| ||||||| |||||| |||||||||||||    
T  5799823 gttgaatgcacaacttttgatatgtatatttttataataacttccttaacatatgtccttgagggcacaagtt 5799895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 36012480 - 36012554
Alignment:
Q  237 gatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    |||| |||||||||||| | |||||||| ||||||||  |||| ||||||| |||||||| ||||||||||||||    
T  36012480 gataatttaatttttaagaagttgattgtacgactttcaatacttatatttctataataagttctttaacatgtg 36012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 1035660 - 1035573
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||| | ||||| |||| ||||||| ||| |||||||| |||||| | ||| |||||||||| ||| |||||||||||||    
T  1035660 tttaacttttaataagttgaatgcaagacttttgatatgtatatttctataatgagttccttaacatgtgcccttgagggcacaagtt 1035573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 15281383 - 15281470
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||||||||||| ||| | ||||||| |||| || | ||||||| |||||||| || |||||||||| |||| || ||||||||||    
T  15281383 tttaatttttaaaaagttaaatgcacgatttttaatgcatatatttctataataaattttttaacatgtatccttgatggcacaagtt 15281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 16394892 - 16394821
Alignment:
Q  267 cgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||||||| ||||||||||||||||||| | ||| ||||||||| |||| || | |||||||| | ||||||    
T  16394892 cgacttttaatacgtatatttttataatgagttccttaacatgtatccttgaagacacaagttagcatttgc 16394821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 16583253 - 16583178
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    ||||| ||||| | |||| | ||||| | |||||||||| |||||||| |||||||||||| ||| ||||||||||    
T  16583253 tgataatttaactattaagaagttgactacacgacttttgatacgtatgtttttataataagttccttaacatgtg 16583178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 25366827 - 25366740
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||||| ||| ||| |||||||||| ||||| ||| || |||| | | ||| |||||||||||||| ||| |||||||||    
T  25366827 tttaacttttaaaaagtttattacacgacttttgatacggataattctatattgagttccttaacatgtgtccttgagagcacaagtt 25366740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 4084790 - 4084736
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataa 296  Q
    ||||| |||||||| ||||| | |||||||||| |||||||||||| ||||||||    
T  4084790 tttaacttttaaaaagttgactacacgacttttaatacgtatatttctataataa 4084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 29033013 - 29033091
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    |||||| | ||||| ||||| |||||| |||||||||||| |||| | ||||| |||||||||||| | || |||||||    
T  29033013 ttttaagaagttgaatgcacaacttttgatacgtatatttctatactgatttccttaacatgtgtcattgaaggcacaa 29033091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 11017960 - 11018001
Alignment:
Q  173 cacatgttaaggaac-taaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  11017960 cacatgttaaggaacctaaaatgagcaactttgcattggaaa 11018001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 12499 - 12415
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    |||| ||||||| | ||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||| |||| ||||||||||    
T  12499 tttagtttttaagaagttgaatgcacaacttttgatacgtatatttttataattagttctttaacatgtctccttgagggcacaa 12415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 32786882 - 32786786
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    ||||| |||||| | ||||| |||||||||||| |||||||||||| |||||| | ||| |||||||||| ||| ||||||||||||| | ||||||    
T  32786882 tttaacttttaagaagttgaatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagttagcatttgc 32786786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 26852605 - 26852654
Alignment:
Q  158 acttgtgccctaag-acacatgttaaggaactaaaaa-gagcaactttgc 205  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||    
T  26852605 acttgtgtcctaaggacacatgttaaggaactaaaaatgagcaactttgc 26852654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 28337296 - 28337215
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggca 323  Q
    ||||| |||||| | ||||||||||||| |||| |||| ||||||| |||||| | ||  |||||||||| ||| |||||||    
T  28337296 tttaacttttaagaagttgattgcacgattttttatacatatatttctataatgagtttcttaacatgtgcccttgagggca 28337215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 45837951 - 45837910
Alignment:
Q  173 cacatgttaaggaa-ctaaaaagagcaactttgcattggaaa 213  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  45837951 cacatgttaagcaatctaaaaagagcaactttgcattggaaa 45837910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 28337346 - 28337310
Alignment:
Q  174 acatgttaaggaa-ctaaaaagagcaactttgcattg 209  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28337346 acatgttaaggaatctaaaaagagcaactttgcattg 28337310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 42051181 - 42051277
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    ||||| |||||| | ||||| |||||||||||| |||| |||||||||||||| | ||| |||| ||||||||| || |||||||||| | ||||||    
T  42051181 tttaacttttaacaagttgaatgcacgacttttgatacatatatttttataatgagttcattaatatgtgtccttgatggcacaagttagcatttgc 42051277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 26546081 - 26546028
Alignment:
Q  263 tgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctc 316  Q
    |||||||||||| ||| ||||||||||||||||| || ||||||||||||||||    
T  26546081 tgcacgacttttaatatgtatatttttataataacttttttaacatgtgtcctc 26546028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 27918405 - 27918501
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    ||||| |||||| | ||| | |||||||||||| |||| ||||||| |||||  | ||| |||||||||||||| ||||||||||||| | ||||||    
T  27918405 tttaacttttaagaagtttaatgcacgacttttgatacatatatttctataacgagttccttaacatgtgtccttgagggcacaagttagcatttgc 27918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 22019487 - 22019385
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatt 335  Q
    ||||| ||| |||||| | | ||||| || |||| |||| || | ||||||| |||||| | |||||||||||||||||| ||||||||||||| | |||    
T  22019487 tgatagtttcattttttagaagttgaatgtacgatttttaatgcatatatttctataatgagttctttaacatgtgtccttgagggcacaagttagcatt 22019388  T
Q  336 tgc 338  Q
    |||    
T  22019387 tgc 22019385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 1961687 - 1961618
Alignment:
Q  257 gttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    ||||| |||||||||||| |||  ||||||| |||||||| || ||||||||||| ||| ||||||||||    
T  1961687 gttgaatgcacgacttttgatatttatatttctataataagttttttaacatgtgcccttgagggcacaa 1961618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 30033486 - 30033543
Alignment:
Q  158 acttgtgccctaa-gacacatgttaaggaact-aaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||    
T  30033486 acttgtgccctaaaggcatatgttaaggaactcaaaaagagcaactttgcattggaaa 30033543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 29508823 - 29508766
Alignment:
Q  158 acttgtgccctaaga-cacatgttaaggaact-aaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||||  |||||||||||||||  ||||||||||| |||||||||||||    
T  29508823 acttgtgccctaagggcacatgttaaggaacccaaaaagagcaattttgcattggaaa 29508766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 36989919 - 36989838
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||| | ||||| |||||||||||| ||| ||||||||||||||| | ||  |||| ||||| ||| |||| ||||||||    
T  36989919 ttttaagaagttgaatgcacgacttttaatatgtatatttttataatgagtttcttaatatgtgcccttgaggacacaagtt 36989838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 36989976 - 36989936
Alignment:
Q  174 acatgttaaggaa-ctaaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  36989976 acatgttaaggaatctaaaaagtgcaactttgcattggaaa 36989936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 39260089 - 39260037
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataat 294  Q
    |||||||||||| | ||||| ||||| |||||| || ||||||||||||||||    
T  39260089 tttaatttttaagaagttgaatgcacaactttttatgcgtatatttttataat 39260037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 338
Target Start/End: Complemental strand, 17587147 - 17587052
Alignment:
Q  243 ttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||| |||||| ||||||| |||||||||||| |||||||| ||| ||| | || ||| |||||||||| ||| |||||||||||||  |||||||    
T  17587147 ttaacttttaagatgttgaatgcacgacttttgatacgtatttttctattacaagttcattaacatgtgcccttgagggcacaagttaatatttgc 17587052  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 47006688 - 47006601
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    ||||| |||||| | ||||| |||||||||||| || || |||||| ||||| || ||| |||||||||| ||| |||||||||||||    
T  47006688 tttaaattttaagaagttgaatgcacgacttttgatgcgaatatttctataaaaagttccttaacatgtgcccttgagggcacaagtt 47006601  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 39430419 - 39430362
Alignment:
Q  158 acttgtgccctaag-acacatgttaaggaact-aaaaagagcaactttgcattggaaa 213  Q
    ||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  39430419 acttgtgtcctaaggacatatgttaaggaactcaaaaagagcaactttgcattggaaa 39430362  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 33791571 - 33791475
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    ||||| |||||||| ||||| || ||||| ||| ||||||||||||||| ||| | ||| ||||||| |||| | |||| |||||||| | ||||||    
T  33791571 tttaacttttaaaaagttgaatgtacgacatttgatacgtatatttttacaatgaattccttaacatatgtcgttgaggacacaagttagcatttgc 33791475  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 4539954 - 4539879
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    ||||| ||||| |||||| | ||||||||||||| |||| |||| |||||||||||||| | ||  ||||||||||    
T  4539954 tgataatttaacttttaagaagttgattgcacgatttttaatacatatatttttataatgagtttcttaacatgtg 4539879  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 25134177 - 25134243
Alignment:
Q  263 tgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||||||||| |||| ||||||| |||||| | ||| |||||||||||| | ||| |||||||||    
T  25134177 tgcacgacttttgatacatatatttctataatgagttccttaacatgtgtctttgagagcacaagtt 25134243  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 47499447 - 47499512
Alignment:
Q  248 ttttaaaatgttgattgcacgacttttcatacgtatatttttataat-aatttctttaacatgtgtc 313  Q
    |||||||| ||||| | ||| |||||| ||||||||||||||||||| |||||| ||||||||||||    
T  47499447 ttttaaaaagttgaattcacaacttttaatacgtatatttttataatgaatttc-ttaacatgtgtc 47499512  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 18030131 - 18030090
Alignment:
Q  173 cacatgttaaggaac-taaaaagagcaactttgcattggaaa 213  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  18030131 cacatgttaaggaacctaaaaagagtaactttgcattggaaa 18030090  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 53741346 - 53741415
Alignment:
Q  243 ttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgt 312  Q
    |||| |||||| | ||||| || | ||||||| |||||||||||| |||||| | |||||||||||||||    
T  53741346 ttaacttttaagaagttgaatgtatgacttttgatacgtatatttctataatgaattctttaacatgtgt 53741415  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 13637982 - 13637886
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||||||||||| |  |||| ||||||| |||| || |||||||||||||||| | ||  |||||||||||  | ||||||| ||||| | ||||||    
T  13637982 tttaatttttaagaatttgaatgcacgaattttgatgcgtatatttttataatgactttcttaacatgtgtaattgagggcataagttagcatttgc 13637886  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 19961199 - 19961139
Alignment:
Q  269 acttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagtt 329  Q
    |||||| |||||||||||| |||||| | ||| ||||||||| ||||  ||||||||||||    
T  19961199 acttttgatacgtatatttctataattagttccttaacatgtatccttcagggcacaagtt 19961139  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 28787762 - 28787690
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcc 314  Q
    |||||||||||||  ||| | | ||| |||||| ||||||||||||||||||| | ||| |||| ||||||||    
T  28787762 tttaatttttaaatagtttaatacacaacttttaatacgtatatttttataatgagttccttaagatgtgtcc 28787690  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 326
Target Start/End: Original strand, 47849993 - 47850077
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaa 326  Q
    |||||||||||||| || || |||| || |||| |||  ||||||| |||||| | ||| |||||||||||||| |||| |||||    
T  47849993 tttaatttttaaaaagtcgaatgcatgaattttgatagatatatttctataatgagttccttaacatgtgtccttgaggacacaa 47850077  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 41144650 - 41144735
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaag 327  Q
    ||||| |||||||| ||||| |||||||||||| ||| |||||||| |||||| | ||| |||||||||| ||| |||| ||||||    
T  41144650 tttaacttttaaaaagttgaatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggacacaag 41144735  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 16627328 - 16627380
Alignment:
Q  242 tttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataat 294  Q
    ||||| |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  16627328 tttaacttttaaaaagttgaatgcacgacttttaatacatatatttttataat 16627380  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 26105085 - 26105005
Alignment:
Q  258 ttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    |||| |||||||||||| || ||||||||| | |||||| ||| |||||||||||| | ||| ||||||||| | ||||||    
T  26105085 ttgaatgcacgactttttatgcgtatatttctttaataagttccttaacatgtgtcattgagtgcacaagttagcatttgc 26105005  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 10523731 - 10523678
Alignment:
Q  258 ttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtg 311  Q
    |||| |||||||||||| |||||||||||| |||||| | ||| ||||||||||    
T  10523731 ttgaatgcacgacttttgatacgtatatttctataatgagttccttaacatgtg 10523678  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 29557570 - 29557497
Alignment:
Q  236 tgatactttaatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatg 309  Q
    ||||| ||||| ||||||||  || | | |||||||||| |||| ||||||| |||||||| ||||||||||||    
T  29557570 tgataatttaacttttaaaaatttaactacacgacttttgatacatatatttctataataaattctttaacatg 29557497  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 29557630 - 29557574
Alignment:
Q  159 cttgtgccctaaga-cacatgttaaggaactaaaaa-gagcaactttgcattggaaa 213  Q
    |||||||||||||| |||||||||||||||  |||| ||||||||||| ||||||||    
T  29557630 cttgtgccctaagagcacatgttaaggaacccaaaatgagcaactttgtattggaaa 29557574  T

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Target: scaffold0542 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 4604 - 4511
Alignment:
Q  245 aatttttaaaatgttgattgcacgacttttcatacgtatatttttataataatttctttaacatgtgtcctcgagggcacaagttggtatttgc 338  Q
    ||||||||| | ||||| ||||||  |||| ||| |||||||| |||||| | |   |||||||||||||| ||||||||||||| | ||||||    
T  4604 aatttttaagaagttgaatgcacgcattttgatatgtatatttctataatgagtatcttaacatgtgtccttgagggcacaagttagcatttgc 4511  T

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