View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_132 (Length: 338)

Name: NF1199_low_132
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_132
NF1199_low_132
[»] chr2 (27 HSPs)
chr2 (32-187)||(10310658-10310813)
chr2 (298-334)||(14288651-14288687)
chr2 (299-338)||(10812417-10812456)
chr2 (299-338)||(11222302-11222341)
chr2 (299-338)||(15182987-15183026)
chr2 (229-280)||(31561892-31561943)
chr2 (299-338)||(36375791-36375830)
chr2 (299-338)||(44360651-44360690)
chr2 (306-338)||(3376270-3376302)
chr2 (306-338)||(30264595-30264627)
chr2 (299-338)||(3363802-3363841)
chr2 (299-338)||(4654937-4654976)
chr2 (299-338)||(4883821-4883860)
chr2 (299-338)||(13754174-13754212)
chr2 (299-338)||(14308611-14308650)
chr2 (299-334)||(15893566-15893601)
chr2 (299-338)||(19594568-19594607)
chr2 (299-338)||(26342798-26342837)
chr2 (299-338)||(31011704-31011743)
chr2 (299-338)||(34357396-34357435)
chr2 (299-338)||(41885843-41885882)
chr2 (301-338)||(13965825-13965862)
chr2 (299-336)||(34399422-34399459)
chr2 (298-335)||(36173280-36173317)
chr2 (310-338)||(14295754-14295782)
chr2 (298-338)||(25186815-25186855)
chr2 (306-338)||(37093667-37093699)
[»] chr8 (32 HSPs)
chr8 (30-190)||(38434789-38434949)
chr8 (299-338)||(8453219-8453258)
chr8 (299-338)||(11994099-11994138)
chr8 (299-338)||(15596562-15596601)
chr8 (299-338)||(18291681-18291720)
chr8 (299-338)||(18842747-18842786)
chr8 (299-338)||(35052271-35052310)
chr8 (306-338)||(13328188-13328220)
chr8 (228-284)||(40859843-40859899)
chr8 (299-338)||(2888451-2888490)
chr8 (299-338)||(14228305-14228344)
chr8 (299-338)||(23848539-23848578)
chr8 (299-338)||(25703561-25703600)
chr8 (299-338)||(25812732-25812771)
chr8 (299-338)||(33935043-33935082)
chr8 (299-334)||(34982051-34982086)
chr8 (299-338)||(38128530-38128569)
chr8 (299-334)||(38482775-38482810)
chr8 (300-338)||(26062925-26062963)
chr8 (309-338)||(4057506-4057535)
chr8 (301-338)||(16656918-16656955)
chr8 (306-338)||(1245530-1245562)
chr8 (294-338)||(10180588-10180632)
chr8 (306-338)||(14263762-14263794)
chr8 (306-338)||(17074572-17074604)
chr8 (306-338)||(17573666-17573698)
chr8 (306-338)||(21651736-21651768)
chr8 (228-268)||(26771159-26771199)
chr8 (306-338)||(36058450-36058482)
chr8 (299-338)||(39303498-39303538)
chr8 (299-335)||(40228516-40228552)
chr8 (307-335)||(45317873-45317901)
[»] chr5 (23 HSPs)
chr5 (299-338)||(6754159-6754198)
chr5 (293-338)||(4175454-4175499)
chr5 (297-338)||(38910473-38910514)
chr5 (299-338)||(2673958-2673997)
chr5 (299-338)||(4985155-4985194)
chr5 (299-338)||(9127331-9127370)
chr5 (299-338)||(16124240-16124279)
chr5 (298-334)||(7404056-7404092)
chr5 (298-338)||(8825257-8825297)
chr5 (302-338)||(10359218-10359254)
chr5 (306-338)||(18020755-18020787)
chr5 (299-334)||(7579647-7579682)
chr5 (299-338)||(14793770-14793809)
chr5 (299-338)||(25344160-25344199)
chr5 (299-338)||(26854075-26854114)
chr5 (299-334)||(39073248-39073283)
chr5 (300-338)||(28024240-28024278)
chr5 (298-338)||(1297716-1297756)
chr5 (306-338)||(4098531-4098563)
chr5 (295-331)||(6072659-6072695)
chr5 (306-338)||(12665058-12665090)
chr5 (306-338)||(36239658-36239690)
chr5 (229-281)||(42646535-42646587)
[»] chr1 (26 HSPs)
chr1 (299-338)||(8464237-8464276)
chr1 (297-338)||(12231049-12231090)
chr1 (298-338)||(43500724-43500764)
chr1 (299-338)||(13566897-13566936)
chr1 (299-338)||(29830971-29831010)
chr1 (299-338)||(35531275-35531314)
chr1 (306-338)||(31487766-31487798)
chr1 (306-338)||(37609291-37609323)
chr1 (298-338)||(38648675-38648715)
chr1 (299-334)||(1024778-1024813)
chr1 (299-338)||(1677416-1677455)
chr1 (299-338)||(2059792-2059831)
chr1 (299-338)||(13507988-13508027)
chr1 (299-338)||(13515176-13515215)
chr1 (229-284)||(15784225-15784280)
chr1 (299-338)||(40926733-40926772)
chr1 (309-338)||(7783168-7783197)
chr1 (299-332)||(18033806-18033839)
chr1 (299-336)||(36318572-36318609)
chr1 (298-334)||(1429506-1429542)
chr1 (306-338)||(5598263-5598295)
chr1 (232-284)||(11893079-11893131)
chr1 (228-284)||(18556806-18556862)
chr1 (299-335)||(48264756-48264792)
chr1 (306-338)||(51974158-51974190)
chr1 (306-338)||(52649716-52649748)
[»] chr7 (15 HSPs)
chr7 (298-338)||(33174025-33174065)
chr7 (299-338)||(5732059-5732098)
chr7 (299-338)||(17896477-17896516)
chr7 (306-338)||(36922458-36922490)
chr7 (299-338)||(6799637-6799676)
chr7 (299-338)||(8382044-8382083)
chr7 (299-338)||(31430777-31430816)
chr7 (299-338)||(33921760-33921799)
chr7 (299-338)||(41675173-41675212)
chr7 (299-338)||(47408331-47408370)
chr7 (306-335)||(9601886-9601915)
chr7 (306-335)||(9829457-9829486)
chr7 (229-265)||(420256-420292)
chr7 (298-334)||(12838063-12838099)
chr7 (306-338)||(32966042-32966074)
[»] chr4 (35 HSPs)
chr4 (298-338)||(9834501-9834541)
chr4 (299-338)||(354187-354226)
chr4 (299-338)||(22828385-22828424)
chr4 (299-338)||(44013897-44013936)
chr4 (299-338)||(44217927-44217966)
chr4 (306-338)||(19093144-19093176)
chr4 (306-338)||(26620342-26620374)
chr4 (306-338)||(35231911-35231943)
chr4 (299-335)||(38009750-38009786)
chr4 (298-338)||(44069252-44069292)
chr4 (299-335)||(56576088-56576124)
chr4 (299-338)||(4201314-4201353)
chr4 (299-334)||(8735614-8735649)
chr4 (299-338)||(13629177-13629216)
chr4 (299-338)||(16464766-16464805)
chr4 (299-338)||(22678293-22678332)
chr4 (299-338)||(33084694-33084733)
chr4 (299-338)||(33755015-33755054)
chr4 (299-338)||(35232282-35232321)
chr4 (299-338)||(36408973-36409012)
chr4 (299-338)||(36423139-36423178)
chr4 (299-334)||(38617293-38617328)
chr4 (299-334)||(47428744-47428779)
chr4 (299-338)||(52061779-52061818)
chr4 (299-338)||(52677150-52677189)
chr4 (299-338)||(53599770-53599809)
chr4 (299-333)||(23621577-23621611)
chr4 (306-335)||(8456902-8456931)
chr4 (298-338)||(6195245-6195285)
chr4 (228-284)||(23277302-23277358)
chr4 (306-338)||(33751334-33751366)
chr4 (298-338)||(39683697-39683737)
chr4 (306-338)||(48782420-48782452)
chr4 (298-334)||(49089131-49089167)
chr4 (306-338)||(55703141-55703173)
[»] chr3 (31 HSPs)
chr3 (298-338)||(45101346-45101386)
chr3 (299-338)||(33491128-33491167)
chr3 (299-338)||(53745271-53745310)
chr3 (297-338)||(42671877-42671918)
chr3 (306-338)||(29698209-29698241)
chr3 (306-338)||(52627234-52627266)
chr3 (299-338)||(2858566-2858605)
chr3 (307-338)||(19550464-19550495)
chr3 (299-338)||(20848713-20848752)
chr3 (299-334)||(29803870-29803905)
chr3 (299-338)||(32980858-32980897)
chr3 (299-338)||(34266429-34266468)
chr3 (299-334)||(36234586-36234621)
chr3 (299-338)||(41425847-41425886)
chr3 (299-338)||(43554607-43554646)
chr3 (299-338)||(43775379-43775418)
chr3 (299-338)||(43945597-43945636)
chr3 (299-338)||(47069846-47069885)
chr3 (299-338)||(49123740-49123779)
chr3 (299-338)||(51219082-51219121)
chr3 (299-338)||(54106481-54106520)
chr3 (300-338)||(13168223-13168261)
chr3 (299-332)||(20105397-20105430)
chr3 (309-338)||(27992458-27992487)
chr3 (306-335)||(28226637-28226666)
chr3 (297-338)||(33874533-33874574)
chr3 (299-332)||(40139831-40139864)
chr3 (305-338)||(41168976-41169009)
chr3 (306-338)||(24981508-24981540)
chr3 (298-338)||(29651886-29651926)
chr3 (310-338)||(54898086-54898114)
[»] scaffold0280 (1 HSPs)
scaffold0280 (299-338)||(8372-8411)
[»] scaffold0024 (1 HSPs)
scaffold0024 (299-338)||(49364-49403)
[»] chr6 (12 HSPs)
chr6 (299-338)||(12732393-12732432)
chr6 (299-338)||(22050266-22050305)
chr6 (299-338)||(24663597-24663636)
chr6 (298-338)||(30388984-30389024)
chr6 (299-338)||(1751415-1751454)
chr6 (299-338)||(3621808-3621847)
chr6 (299-338)||(17193376-17193415)
chr6 (299-338)||(19645706-19645745)
chr6 (299-338)||(23923697-23923736)
chr6 (299-334)||(31244733-31244768)
chr6 (310-338)||(17123980-17124008)
chr6 (299-331)||(27605416-27605448)
[»] scaffold0040 (1 HSPs)
scaffold0040 (299-338)||(69317-69356)
[»] scaffold0014 (1 HSPs)
scaffold0014 (299-338)||(195571-195610)
[»] scaffold0009 (1 HSPs)
scaffold0009 (299-338)||(147111-147150)
[»] scaffold0002 (1 HSPs)
scaffold0002 (300-338)||(138727-138765)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 10310658 - 10310813
Alignment:
Q  32 atggaccttatgtgagatgaaattggtaaaatattcagctcatcatccatgaccgcacatgccttgcaagaagcgagtgataataagaaacgttcattaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||    
T  10310658 atggaccttatgtgagatgaaattggtaaaatattcagctcgtcatccatgaacacacaagccttgcaagaagcaagtgataataagaagcgttcattaa 10310757  T
Q  132 agcgcccagtagcctcattgtgtgactcagttcgaaatcgatcatggacatcctgc 187  Q
    |||| || || || ||  ||||||| |||||||||||||  |||||||||||||||    
T  10310758 agcgtccggtggcatccatgtgtgattcagttcgaaatctttcatggacatcctgc 10310813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 14288687 - 14288651
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttga 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  14288687 ctactacttccgttcctttttaattgtcacattttga 14288651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 10812456 - 10812417
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  10812456 tactacctccgttcctttttaattgtcacattttgacatt 10812417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 11222302 - 11222341
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  11222302 tactacctccgttcctttttaattgtcacattttgacatt 11222341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 15182987 - 15183026
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  15182987 tactacctccgttcctttttaattgtcacattttgacatt 15183026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 31561943 - 31561892
Alignment:
Q  229 cctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgctta 280  Q
    ||||| |||||||||||||| || |||||||||||||||||| |||||||||    
T  31561943 cctgtatggataaacagcttatagcacaagcgtttatcatgataagcgctta 31561892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 36375830 - 36375791
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  36375830 tactacctccgttcctttttaattgtcacattttgacatt 36375791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 44360690 - 44360651
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  44360690 tactacctccgttcctttttaattgtcacattttgacatt 44360651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 3376270 - 3376302
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  3376270 tccgttcctttttaattgtcacattttgacatt 3376302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 30264595 - 30264627
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  30264595 tccgttcctttttaattgtcacattttgacatt 30264627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 3363841 - 3363802
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  3363841 tactacctccgttcctttttaattgtcgcattttgacatt 3363802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 4654976 - 4654937
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  4654976 tactacctccgttcctttttaattgtctcattttgacatt 4654937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 4883860 - 4883821
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  4883860 tactacatccattcctttttaattgtcacattttgacatt 4883821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 13754212 - 13754174
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  13754212 tactacttccgttcctttttaattgtcac-ttttgacatt 13754174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 14308650 - 14308611
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  14308650 tactacatccgtttctttttaattgtcacattttgacatt 14308611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 15893566 - 15893601
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  15893566 tactacctccgttcctttttaattgtcacattttga 15893601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 19594607 - 19594568
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  19594607 tactacctccgttactttttaattgtcacattttgacatt 19594568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 26342837 - 26342798
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  26342837 tactacctccgttcctttttaattgtcacgttttgacatt 26342798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 31011704 - 31011743
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  31011704 tactacctccgttcctttttaattgttacattttgacatt 31011743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 34357435 - 34357396
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  34357435 tactacctccgttcctttttaattgtcacatttcgacatt 34357396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 41885882 - 41885843
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  41885882 tactacctccgttcctttttcattgtcacattttgacatt 41885843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 13965862 - 13965825
Alignment:
Q  301 ctacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  13965862 ctacctccgttcctttttaattgtcactttttgacatt 13965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 34399459 - 34399422
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgaca 336  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  34399459 tactacctccgttcctttttaattatcacattttgaca 34399422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 36173317 - 36173280
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgac 335  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  36173317 ctactccttccgttcttttttaattgtcacattttgac 36173280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 14295754 - 14295782
Alignment:
Q  310 ttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||    
T  14295754 ttcctttttaattgtcacattttgacatt 14295782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 25186815 - 25186855
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||  ||||| ||||||||||    
T  25186815 ctactacttccgttcctttttaaccgtcactttttgacatt 25186855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 37093699 - 37093667
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| |||||||||||||||||||||||||||    
T  37093699 tccgtacctttttaattgtcacattttgacatt 37093667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 38434789 - 38434949
Alignment:
Q  30 taatggaccttatgtgagatgaaattggtaaaatattcagctcatcatccatgaccgcacatgccttgcaagaagcgagtgataataagaaacgttcatt 129  Q
    |||| |||||||||||||||||||||||||| | |||||||||||| ||||||||| | |||||||| || || || | ||||| ||| || ||||||||    
T  38434789 taatcgaccttatgtgagatgaaattggtaatacattcagctcatcgtccatgaccacgcatgccttacaggaggcaattgatagtaaaaagcgttcatt 38434888  T
Q  130 aaagcgcccagtagcctcattgtgtgactcagttcgaaatcgatcatggacatcctgcaat 190  Q
    ||||||||||||||| | |  ||| || |||||||||||||  || |||||||||||||||    
T  38434889 aaagcgcccagtagcttgagagtgggattcagttcgaaatctgtcgtggacatcctgcaat 38434949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 8453219 - 8453258
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  8453219 tactacctccgttcctttttaattgtcacattttgacatt 8453258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 11994138 - 11994099
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  11994138 tactacatccgttcctttttaattgtcacattttgacatt 11994099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 15596601 - 15596562
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  15596601 tactacctccgttcctttttaattgtcacattttgacatt 15596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 18291720 - 18291681
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  18291720 tactacctccgttcctttttaattgtcacattttgacatt 18291681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 18842786 - 18842747
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  18842786 tactacctccgttcctttttaattgtcacattttgacatt 18842747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 35052310 - 35052271
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  35052310 tactacctccgttcctttttaattgtcacattttgacatt 35052271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 13328220 - 13328188
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  13328220 tccgttcctttttaattgtcacattttgacatt 13328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 40859899 - 40859843
Alignment:
Q  228 gcctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttatgta 284  Q
    |||||||||||||| |||||| || |||||| | ||||||||| |||||||||||||    
T  40859899 gcctgtttggataagcagcttatagcacaagtgcttatcatgataagcgcttatgta 40859843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 2888451 - 2888490
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  2888451 tactacctccgttcctttttaattgtcacattttaacatt 2888490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 14228305 - 14228344
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  14228305 tactacctccgttcatttttaattgtcacattttgacatt 14228344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 23848539 - 23848578
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  23848539 tactacctctgttcctttttaattgtcacattttgacatt 23848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 25703561 - 25703600
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  25703561 tactacctccgtttctttttaattgtcacattttgacatt 25703600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 25812732 - 25812771
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  25812732 tactacctccgtttctttttaattgtcacattttgacatt 25812771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 33935043 - 33935082
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  33935043 tactaccttcgttcctttttaattgtcacattttgacatt 33935082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 34982086 - 34982051
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  34982086 tactacctccgttcctttttaattgtcacattttga 34982051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 38128530 - 38128569
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  38128530 tactacctccgttcctttttaattgttacattttgacatt 38128569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 38482775 - 38482810
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  38482775 tactacctccgttcctttttaattgtcacattttga 38482810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 26062963 - 26062925
Alignment:
Q  300 actacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  26062963 actacctccattcctttttaattgtcacattttgacatt 26062925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 4057535 - 4057506
Alignment:
Q  309 gttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||    
T  4057535 gttcctttttaattgtcacattttgacatt 4057506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 16656955 - 16656918
Alignment:
Q  301 ctacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  16656955 ctacatccgtttctttttaattgtcacattttgacatt 16656918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 1245562 - 1245530
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||| ||||||||||    
T  1245562 tccgttcctttttaattgtcactttttgacatt 1245530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 10180632 - 10180588
Alignment:
Q  294 taagctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||| |||||| |||||| |||||||||||||| |||||||||||    
T  10180632 taagttactacatccgtttctttttaattgtcatattttgacatt 10180588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 14263794 - 14263762
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||    
T  14263794 tccgttcttttttaattgtcacattttgacatt 14263762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 17074572 - 17074604
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||| |||||    
T  17074572 tccgttcctttttaattgtcacattttaacatt 17074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 17573698 - 17573666
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||| |||||    
T  17573698 tccgttcctttttaattgtcacattttaacatt 17573666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 21651736 - 21651768
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||    
T  21651736 tccgtttctttttaattgtcacattttgacatt 21651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 26771159 - 26771199
Alignment:
Q  228 gcctgtttggataaacagcttgtatcacaagcgtttatcat 268  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  26771159 gcctgtttggataaacagcttatagcacaagcgcttatcat 26771199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 36058482 - 36058450
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||| ||||||||||||    
T  36058482 tccgttcctttttaattgtcgcattttgacatt 36058450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 39303498 - 39303538
Alignment:
Q  299 tactacttccgttcctttttaa-ttgtcacattttgacatt 338  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  39303498 tactacctccgttcctttttaatttgtcacattttgacatt 39303538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 40228552 - 40228516
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgac 335  Q
    |||||||| | ||||||||||||||||||||||||||    
T  40228552 tactactttcattcctttttaattgtcacattttgac 40228516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 45317901 - 45317873
Alignment:
Q  307 ccgttcctttttaattgtcacattttgac 335  Q
    |||||||||||||||||||||||||||||    
T  45317901 ccgttcctttttaattgtcacattttgac 45317873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 6754159 - 6754198
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6754159 tactacttccgttcctttttaattgtcacattttgacatt 6754198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 4175454 - 4175499
Alignment:
Q  293 ataagctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  4175454 ataagatactacctccgttcctttttaattgtcacattttgacatt 4175499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 38910514 - 38910473
Alignment:
Q  297 gctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  38910514 gctactacctccgttcctttttaattgtcacattttgacatt 38910473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 2673958 - 2673997
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  2673958 tactacctccgttcctttttaattgtcacattttgacatt 2673997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 4985155 - 4985194
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  4985155 tactacctccgttcctttttaattgtcacattttgacatt 4985194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 9127331 - 9127370
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  9127331 tactacctccgttcctttttaattgtcacattttgacatt 9127370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 16124240 - 16124279
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  16124240 tactacctccgttcctttttaattgtcacattttgacatt 16124279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 7404092 - 7404056
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7404092 ctactatttccgttcctttttaattgtcacattttga 7404056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 8825297 - 8825257
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  8825297 ctactacctccgttcctttttaattatcacattttgacatt 8825257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 10359218 - 10359254
Alignment:
Q  302 tacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10359218 tacttccgtttctttttaattgtcacattttgacatt 10359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 18020755 - 18020787
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  18020755 tccgttcctttttaattgtcacattttgacatt 18020787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 7579647 - 7579682
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  7579647 tactacctccgttcctttttaattgtcacattttga 7579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 14793770 - 14793809
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  14793770 tactacctcccttcctttttaattgtcacattttgacatt 14793809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 25344199 - 25344160
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  25344199 tactacctccgttcctttttaattgtcacattttgtcatt 25344160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 26854075 - 26854114
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  26854075 tactacattcgttcctttttaattgtcacattttgacatt 26854114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 39073283 - 39073248
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  39073283 tactacctccgttcctttttaattgtcacattttga 39073248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 28024240 - 28024278
Alignment:
Q  300 actacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  28024240 actacctccgttcctttttaattgtcatattttgacatt 28024278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 1297716 - 1297756
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| ||| ||||||||||||||| |||||||||||||    
T  1297716 ctactacctccattcctttttaattgttacattttgacatt 1297756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 4098563 - 4098531
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||    
T  4098563 tccgtttctttttaattgtcacattttgacatt 4098531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 6072695 - 6072659
Alignment:
Q  295 aagctactacttccgttcctttttaattgtcacattt 331  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  6072695 aagctactacctccgttcctttttaattatcacattt 6072659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 12665090 - 12665058
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||| |||||||||||    
T  12665090 tccgttcctttttaattgtcatattttgacatt 12665058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 36239690 - 36239658
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||    
T  36239690 tccgttcatttttaattgtcacattttgacatt 36239658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 42646535 - 42646587
Alignment:
Q  229 cctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttat 281  Q
    ||||||||||||| |||||| || |||||| | ||||||||| ||||||||||    
T  42646535 cctgtttggataagcagcttatagcacaagtgcttatcatgataagcgcttat 42646587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 8464237 - 8464276
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8464237 tactacttccgttcctttttaattgtcacattttgacatt 8464276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 12231049 - 12231090
Alignment:
Q  297 gctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  12231049 gctactacctccgttcctttttaattgtcacattttgacatt 12231090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 43500764 - 43500724
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43500764 ctactacctccgttcctttttaattgtcacattttgacatt 43500724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 13566936 - 13566897
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  13566936 tactacctccgttcctttttaattgtcacattttgacatt 13566897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 29831010 - 29830971
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  29831010 tactacctccgttcctttttaattgtcacattttgacatt 29830971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 35531275 - 35531314
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  35531275 tactacctccgttcctttttaattgtcacattttgacatt 35531314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31487766 - 31487798
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  31487766 tccgttcctttttaattgtcacattttgacatt 31487798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 37609291 - 37609323
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  37609291 tccgttcctttttaattgtcacattttgacatt 37609323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 38648715 - 38648675
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  38648715 ctactacctccgtttctttttaattgtcacattttgacatt 38648675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 1024813 - 1024778
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  1024813 tactacctccgttcctttttaattgtcacattttga 1024778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 1677455 - 1677416
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  1677455 tactacctccgctcctttttaattgtcacattttgacatt 1677416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 2059792 - 2059831
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  2059792 tactacctccattcctttttaattgtcacattttgacatt 2059831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 13508027 - 13507988
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  13508027 tactacctccgttcctttttaattatcacattttgacatt 13507988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 13515215 - 13515176
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  13515215 tactacctccgttcctttttaattatcacattttgacatt 13515176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 15784225 - 15784280
Alignment:
Q  229 cctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttatgta 284  Q
    ||||||||||||||||| || ||||||||||  |||| |||| |||||||||||||    
T  15784225 cctgtttggataaacagtttatatcacaagcacttattatgataagcgcttatgta 15784280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 40926733 - 40926772
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  40926733 tactacctccgttcttttttaattgtcacattttgacatt 40926772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 7783197 - 7783168
Alignment:
Q  309 gttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||    
T  7783197 gttcctttttaattgtcacattttgacatt 7783168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 18033806 - 18033839
Alignment:
Q  299 tactacttccgttcctttttaattgtcacatttt 332  Q
    |||||| |||||||||||||||||||||||||||    
T  18033806 tactacctccgttcctttttaattgtcacatttt 18033839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 36318609 - 36318572
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgaca 336  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  36318609 tactacctccgttcctttttaattgtcactttttgaca 36318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 1429542 - 1429506
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttga 334  Q
    ||||||| | |||||||||||||||||||||||||||    
T  1429542 ctactaccttcgttcctttttaattgtcacattttga 1429506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 5598295 - 5598263
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||| |||||||||||    
T  5598295 tccgttcctttttaattgtcatattttgacatt 5598263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 11893079 - 11893131
Alignment:
Q  232 gtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttatgta 284  Q
    ||||||||||||||||| | ||||||||  ||||||||| |||||||| ||||    
T  11893079 gtttggataaacagcttatgtcacaagcacttatcatgataagcgcttttgta 11893131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 18556806 - 18556862
Alignment:
Q  228 gcctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttatgta 284  Q
    ||||||||||||||||||||| || |||||||  ||||| |||| ||||||| ||||    
T  18556806 gcctgtttggataaacagcttatagcacaagcacttatcgtgacgagcgcttgtgta 18556862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 48264756 - 48264792
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgac 335  Q
    |||||| |||||| |||||||||||||||||||||||    
T  48264756 tactacctccgtttctttttaattgtcacattttgac 48264792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 51974158 - 51974190
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||| ||||||||||    
T  51974158 tccgttcctttttaattgtcactttttgacatt 51974190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 52649716 - 52649748
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||| ||||||||||    
T  52649716 tccgttcctttttaattgtcactttttgacatt 52649748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 33174065 - 33174025
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  33174065 ctactacctccgttcctttttaattgtcacattttgacatt 33174025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 5732059 - 5732098
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  5732059 tactacctccgttcctttttaattgtcacattttgacatt 5732098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 17896477 - 17896516
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  17896477 tactacctccgttcctttttaattgtcacattttgacatt 17896516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 36922490 - 36922458
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  36922490 tccgttcctttttaattgtcacattttgacatt 36922458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 6799676 - 6799637
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  6799676 tactacctccgttcctttttaattgtcacatgttgacatt 6799637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 8382083 - 8382044
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  8382083 tactacctccgttcctttttaattatcacattttgacatt 8382044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 31430816 - 31430777
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  31430816 tactacctctgttcctttttaattgtcacattttgacatt 31430777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 33921760 - 33921799
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  33921760 tactacctccgttcctttttaattgtcacattttaacatt 33921799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 41675173 - 41675212
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  41675173 tactacctctgttcctttttaattgtcacattttgacatt 41675212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 47408370 - 47408331
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  47408370 tactacctccgttcctttttaattgtcactttttgacatt 47408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 9601886 - 9601915
Alignment:
Q  306 tccgttcctttttaattgtcacattttgac 335  Q
    ||||||||||||||||||||||||||||||    
T  9601886 tccgttcctttttaattgtcacattttgac 9601915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 9829457 - 9829486
Alignment:
Q  306 tccgttcctttttaattgtcacattttgac 335  Q
    ||||||||||||||||||||||||||||||    
T  9829457 tccgttcctttttaattgtcacattttgac 9829486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 420256 - 420292
Alignment:
Q  229 cctgtttggataaacagcttgtatcacaagcgtttat 265  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  420256 cctgtttggataaacagcttatatcaaaagcgtttat 420292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 12838063 - 12838099
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttga 334  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  12838063 ctactacctccgatcctttttaattgtcacattttga 12838099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 32966042 - 32966074
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||| |||||    
T  32966042 tccgttcctttttaattgtcacattttaacatt 32966074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 9834541 - 9834501
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9834541 ctactacctccgttcctttttaattgtcacattttgacatt 9834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 354226 - 354187
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  354226 tactacctccgttcctttttaattgtcacattttgacatt 354187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 22828385 - 22828424
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  22828385 tactacctccgttcctttttaattgtcacattttgacatt 22828424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 44013897 - 44013936
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  44013897 tactacctccgttcctttttaattgtcacattttgacatt 44013936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 44217966 - 44217927
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  44217966 tactacctccgttcctttttaattgtcacattttgacatt 44217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 19093144 - 19093176
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  19093144 tccgttcctttttaattgtcacattttgacatt 19093176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 26620342 - 26620374
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  26620342 tccgttcctttttaattgtcacattttgacatt 26620374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 35231943 - 35231911
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  35231943 tccgttcctttttaattgtcacattttgacatt 35231911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 38009750 - 38009786
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgac 335  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38009750 tactacctccgttcctttttaattgtcacattttgac 38009786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 44069292 - 44069252
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  44069292 ctactacctccgtttctttttaattgtcacattttgacatt 44069252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 56576088 - 56576124
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgac 335  Q
    |||||| ||||||||||||||||||||||||||||||    
T  56576088 tactacctccgttcctttttaattgtcacattttgac 56576124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 4201314 - 4201353
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  4201314 tactacttccgttcgttttcaattgtcacattttgacatt 4201353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 8735649 - 8735614
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  8735649 tactacctccgttcctttttaattgtcacattttga 8735614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 13629177 - 13629216
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  13629177 tactacctctgttcctttttaattgtcacattttgacatt 13629216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 16464766 - 16464805
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  16464766 tactacctccgttcctttttagttgtcacattttgacatt 16464805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 22678293 - 22678332
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  22678293 tactacctccgttcatttttaattgtcacattttgacatt 22678332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 33084733 - 33084694
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  33084733 tactatttccgttcctttttaattgtcactttttgacatt 33084694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 33755015 - 33755054
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  33755015 tactacctccgttcctttttaattgtcacattttaacatt 33755054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 35232282 - 35232321
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  35232282 tactacatccgttcttttttaattgtcacattttgacatt 35232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 36409012 - 36408973
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  36409012 tactacctccgttcctttttaattgtcatattttgacatt 36408973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 36423178 - 36423139
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  36423178 tactacctccgttcctttttaattgtcatattttgacatt 36423139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 38617293 - 38617328
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  38617293 tactacctccgttcctttttaattgtcacattttga 38617328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 47428779 - 47428744
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  47428779 tactacatccgttcctttttaattgtcacattttga 47428744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 52061818 - 52061779
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  52061818 tactacctccgttcctttttaattgtcatattttgacatt 52061779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 52677150 - 52677189
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  52677150 tactacctccattcctttttaattgtcacattttgacatt 52677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 53599770 - 53599809
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  53599770 tactacctccgttcctttttaattgtcacattttaacatt 53599809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 23621577 - 23621611
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttg 333  Q
    |||||| ||||||||||||||||||||||||||||    
T  23621577 tactacctccgttcctttttaattgtcacattttg 23621611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 8456902 - 8456931
Alignment:
Q  306 tccgttcctttttaattgtcacattttgac 335  Q
    ||||||||||||||||||||||||||||||    
T  8456902 tccgttcctttttaattgtcacattttgac 8456931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 6195285 - 6195245
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| || ||||||||||||||||||| ||||||||||    
T  6195285 ctactacctctgttcctttttaattgtcactttttgacatt 6195245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 23277302 - 23277358
Alignment:
Q  228 gcctgtttggataaacagcttgtatcacaagcgtttatcatgacaagcgcttatgta 284  Q
    ||||||||||||||||||||| || |||||||  |||| |||| ||| |||||||||    
T  23277302 gcctgtttggataaacagcttatagcacaagcacttataatgataagagcttatgta 23277358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 33751334 - 33751366
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||| |||||||||||||    
T  33751334 tccgttcctttttaattgttacattttgacatt 33751366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 39683697 - 39683737
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| ||||||||||||||||| ||||||||| |||||    
T  39683697 ctactacctccgttcctttttaattatcacattttcacatt 39683737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 48782452 - 48782420
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||    
T  48782452 tccgttcatttttaattgtcacattttgacatt 48782420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 49089167 - 49089131
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttga 334  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  49089167 ctactacctccgttcctttttaattgtcactttttga 49089131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 55703173 - 55703141
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||| |||||||||||    
T  55703173 tccgttcctttttaattgtcatattttgacatt 55703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 45101346 - 45101386
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  45101346 ctactacctccgttcctttttaattgtcacattttgacatt 45101386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 33491128 - 33491167
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33491128 tactacctccgttcctttttaattgtcacattttgacatt 33491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 53745271 - 53745310
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  53745271 tactacatccgttcctttttaattgtcacattttgacatt 53745310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 42671877 - 42671918
Alignment:
Q  297 gctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  42671877 gctactacctccgttcttttttaattgtcacattttgacatt 42671918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 29698241 - 29698209
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  29698241 tccgttcctttttaattgtcacattttgacatt 29698209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 52627234 - 52627266
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||    
T  52627234 tccgttcctttttaattgtcacattttgacatt 52627266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 2858566 - 2858605
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  2858566 tactacctccgttcctttttaattgtcacattttaacatt 2858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 307 - 338
Target Start/End: Complemental strand, 19550495 - 19550464
Alignment:
Q  307 ccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||||    
T  19550495 ccgttcctttttaattgtcacattttgacatt 19550464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 20848713 - 20848752
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  20848713 tactacctccgttcctttttaactgtcacattttgacatt 20848752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 29803905 - 29803870
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  29803905 tactacctccgttcctttttaattgtcacattttga 29803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 32980897 - 32980858
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  32980897 tactacatctgttcctttttaattgtcacattttgacatt 32980858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 34266429 - 34266468
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  34266429 tactacctccgttcctttttaatcgtcacattttgacatt 34266468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 36234621 - 36234586
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  36234621 tactacatccgttcctttttaattgtcacattttga 36234586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 41425886 - 41425847
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  41425886 tactacctccgttcctttttaattgtcacattttaacatt 41425847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 43554646 - 43554607
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  43554646 tactacctccgttactttttaattgtcacattttgacatt 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 43775379 - 43775418
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  43775379 tactacctccgttcctttttaattttcacattttgacatt 43775418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 43945636 - 43945597
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  43945636 tactacctccgttcctttttagttgtcacattttgacatt 43945597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 47069846 - 47069885
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  47069846 tactacatccgtttctttttaattgtcacattttgacatt 47069885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 49123779 - 49123740
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  49123779 tactacctccgttcctttttaatagtcacattttgacatt 49123740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 51219082 - 51219121
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  51219082 tactacctccgttcctttttaattgtcacatattgacatt 51219121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 54106520 - 54106481
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  54106520 tactacctccgttcctttttaattgttacattttgacatt 54106481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 13168261 - 13168223
Alignment:
Q  300 actacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  13168261 actacatccgttcctttttaattgtcacatttttacatt 13168223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 20105430 - 20105397
Alignment:
Q  299 tactacttccgttcctttttaattgtcacatttt 332  Q
    |||||| |||||||||||||||||||||||||||    
T  20105430 tactacctccgttcctttttaattgtcacatttt 20105397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 27992487 - 27992458
Alignment:
Q  309 gttcctttttaattgtcacattttgacatt 338  Q
    ||||||||||||||||||||||||||||||    
T  27992487 gttcctttttaattgtcacattttgacatt 27992458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 28226666 - 28226637
Alignment:
Q  306 tccgttcctttttaattgtcacattttgac 335  Q
    ||||||||||||||||||||||||||||||    
T  28226666 tccgttcctttttaattgtcacattttgac 28226637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 33874533 - 33874574
Alignment:
Q  297 gctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||| |||||||||||||||||||||  ||||||||||    
T  33874533 gctactacctccgttcctttttaattgtcattttttgacatt 33874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 40139831 - 40139864
Alignment:
Q  299 tactacttccgttcctttttaattgtcacatttt 332  Q
    |||||| |||||||||||||||||||||||||||    
T  40139831 tactacctccgttcctttttaattgtcacatttt 40139864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 41169009 - 41168976
Alignment:
Q  305 ttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||| |||||||||||||||||||||||||    
T  41169009 ttccgttcttttttaattgtcacattttgacatt 41168976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 24981540 - 24981508
Alignment:
Q  306 tccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| |||||||||||||||||||||||||    
T  24981540 tccgttcttttttaattgtcacattttgacatt 24981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 29651926 - 29651886
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| ||||||| ||||||||||||||||||| |||||    
T  29651926 ctactacctccgttcttttttaattgtcacatttttacatt 29651886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 54898086 - 54898114
Alignment:
Q  310 ttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||    
T  54898086 ttcctttttaattgtcacattttgacatt 54898114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 8411 - 8372
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  8411 tactacctccgttcctttttaattgtcacattttgacatt 8372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 49403 - 49364
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  49403 tactacatccgttcctttttaattgtcacattttgacatt 49364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 12732432 - 12732393
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12732432 tactacttccgttcctttttaattgtcacattttaacatt 12732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 22050305 - 22050266
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  22050305 tactacctccgttcctttttaattgtcacattttgacatt 22050266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 24663636 - 24663597
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  24663636 tactacatccgttcctttttaattgtcacattttgacatt 24663597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 30389024 - 30388984
Alignment:
Q  298 ctactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  30389024 ctactacctccgttcctttttaattatcacattttgacatt 30388984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 1751415 - 1751454
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  1751415 tactacctccgttcttttttaattgtcacattttgacatt 1751454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 3621847 - 3621808
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  3621847 tactacctctgttcctttttaattgtcacattttgacatt 3621808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 17193415 - 17193376
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  17193415 tactacctccgttcctttttaattgtcacgttttgacatt 17193376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 19645706 - 19645745
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  19645706 tactacttccgttcttttttaattgtcactttttgacatt 19645745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 23923697 - 23923736
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  23923697 tactacatccattcctttttaattgtcacattttgacatt 23923736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 31244733 - 31244768
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttga 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  31244733 tactacatccgttcctttttaattgtcacattttga 31244768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 17123980 - 17124008
Alignment:
Q  310 ttcctttttaattgtcacattttgacatt 338  Q
    |||||||||||||||||||||||||||||    
T  17123980 ttcctttttaattgtcacattttgacatt 17124008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 27605416 - 27605448
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattt 331  Q
    |||||| ||||||||||||||||||||||||||    
T  27605416 tactacctccgttcctttttaattgtcacattt 27605448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 69356 - 69317
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  69356 tactacctccgttccttttcaattgtcacattttgacatt 69317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 195571 - 195610
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  195571 tactagttccgttcttttttaattgtcacattttgacatt 195610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 147111 - 147150
Alignment:
Q  299 tactacttccgttcctttttaattgtcacattttgacatt 338  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  147111 tactacctccgttcctttttaattgtcactttttgacatt 147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 138727 - 138765
Alignment:
Q  300 actacttccgttcctttttaattgtcacattttgacatt 338  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  138727 actacatccgttcctttttaattgtcacatttttacatt 138765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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