View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_134 (Length: 334)

Name: NF1199_low_134
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_134
NF1199_low_134
[»] chr1 (1 HSPs)
chr1 (30-322)||(40603525-40603817)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 40603817 - 40603525
Alignment:
Q  30 tccacttcatttgagggggagactctacttgtcccttgatttaatcaatacgttacgtgagaataaaacaaaacacatagaaatgagaaatctataattc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40603817 tccacttcatttgagggggagactctacttgtcccttgatttaatcaatacgttacgtgagaataaaacaaaacacatagaaatgagaaatctataattc 40603718  T
Q  130 tatattttatgtaatatattgaggaaaacccaacattgaaataaggtttagttagacttcataataaagagagtcgatttcttttaaataaataaataaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40603717 tatattttatgtaatatattgaggaaaacccaacattgaaataaggtttagttagacttcataataaagagagtcgatttcttttaaataaataaataaa 40603618  T
Q  230 gagagacaattgttatacctataaaccgttttggatacaatgagttagatctattataaaaaatctaatatggtattataatttattgtttca 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40603617 gagagacaattgttatacctataaaccgttttggatacaatgagttagatccattataaaaaatctaatatggtattataatttattgtttca 40603525  T

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