View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_137 (Length: 332)
Name: NF1199_low_137
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_137 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 31115027 - 31114737
Alignment:
| Q |
10 |
aataatatgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaat |
109 |
Q |
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| T |
31115027 |
aataaaatgatttcggccttgatcaacgtggataagggtttacataaccctaccactctatatatggactcaattaattgtaggttttcaatactccaat |
31114928 |
T |
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| Q |
110 |
tcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaat |
209 |
Q |
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| T |
31114927 |
tcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttgagaaaaggaagttcaacagaacaat |
31114828 |
T |
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| Q |
210 |
gaaacatagctactacatgtatattcatcagtctcaaaaccaaaagtgtattccagtaggaaatggtggaggtacgtaggtgccaaatggaatg |
303 |
Q |
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| T |
31114827 |
gaaacatagctactacatgtatattcatcagtctcaaaaccaaaagtgtattgcagtaggaaatggt---ggtacgtaggtgccaaatggaatg |
31114737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 31088923 - 31088793
Alignment:
| Q |
85 |
aattgtaggttttcaatactccaattcaggacacctagagagaagtttcgtgaaatcttcctcaacttcgaaataaatatcacacaaccgtagggttttg |
184 |
Q |
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|||||||| ||| |||| ||||||||| ||||||| ||||| ||||||| ||||||| | | |||||||||||||||||| | |||| |||| |||||| |
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| T |
31088923 |
aattgtagttttccaatcctccaattcgggacacccagagataagtttcatgaaatccttcccaacttcgaaataaatattaaacaattgtagagttttg |
31088824 |
T |
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| Q |
185 |
agaaaaggaagttcaacagaacaatgaaaca |
215 |
Q |
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| T |
31088823 |
agcataggaagatctacataacaatgaaaca |
31088793 |
T |
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