View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_14 (Length: 630)
Name: NF1199_low_14
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 26484517 - 26483898
Alignment:
| Q |
1 |
aagagactggacatagttaataatttcatcaagcattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcg |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484517 |
aagagactgaacatagttaataatttcatcaagcattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcg |
26484418 |
T |
|
| Q |
101 |
cttattttttcccttctaacctgcacaaaacagaacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgcacaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26484417 |
cttattttttcccttctaacctgcacaaaacagaacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgtacaaaat |
26484318 |
T |
|
| Q |
201 |
aaatgtttatttgatttcattgtagaaactatctatattgttaaaacagattctacctcctattaacggtaattttagcattaaaccatattaaaaa-tt |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
26484317 |
aaatgtctatttgatttcattgtagaaactatctatattgttaaaacagattctacctcctattaacggttattttagcattaaaccatattaaaaaatt |
26484218 |
T |
|
| Q |
300 |
gttatatgtaaaatgtttttacactatcaatcaatcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgtt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484217 |
gttatatgtaaaatgtttttacactatcaatcaatcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgtt |
26484118 |
T |
|
| Q |
400 |
aaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484117 |
aaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgt |
26484018 |
T |
|
| Q |
500 |
gctcgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcgtcacaattttctctatttttcaact |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26484017 |
gctcgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcatcacaattttctctatttttcaact |
26483918 |
T |
|
| Q |
600 |
ttgtattcttatttcccttt |
619 |
Q |
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|||||||||||||||||||| |
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| T |
26483917 |
ttgtattcttatttcccttt |
26483898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 54616103 - 54615979
Alignment:
| Q |
1 |
aagagactggacatagttaataatttcatcaagcattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcg |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
54616103 |
aagagactgaacatagttaatgatttcatcaagcattccagcttttcctgtaattttgttgcatcctggtactaaatcttgcaaatacttcattctctca |
54616004 |
T |
|
| Q |
101 |
cttattttttcccttctaacctgca |
125 |
Q |
| |
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|| || ||||||||||||||||||| |
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| T |
54616003 |
ctaatcttttcccttctaacctgca |
54615979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 521
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
450 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
521 |
Q |
| |
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|||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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