View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_141 (Length: 327)
Name: NF1199_low_141
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_141 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 2859995 - 2859834
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggtt |
173 |
Q |
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| T |
2859995 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggct |
2859896 |
T |
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| Q |
174 |
ctagactagagttgattgaggagaatgctgtgatacattattttagattggattgatttcag |
235 |
Q |
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| T |
2859895 |
ctagactagagttgaatgaggagaatggtgtcatacattaatttagattggattgatttcag |
2859834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 2865380 - 2865274
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggtt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2865380 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattggct |
2865281 |
T |
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| Q |
174 |
ctagact |
180 |
Q |
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| T |
2865280 |
caagact |
2865274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 2884570 - 2884473
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattgg |
171 |
Q |
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| T |
2884570 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaacggtgagaaagctcaactggtggcagggaaagataaacaagaattgg |
2884473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 2864832 - 2864782
Alignment:
| Q |
185 |
ttgattgaggagaatgctgtgatacattattttagattggattgatttcag |
235 |
Q |
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||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
2864832 |
ttgattggggagaatgctgtcatacattaatttagattggattgatttcag |
2864782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 2909438 - 2909341
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaagggtgagaaagctcaactggtggcagggaaagataaacaagaattgg |
171 |
Q |
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||||| |||||| ||| ||||| |||||||| ||||||| |||||||||||| ||| |||||||||||| |||| |||||||||||| |||||| |
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| T |
2909438 |
tcaatctcttgagatttcaaagaaaaaggaaaaggaggatgcaaagaaaaagactgaaaaagctcaactgaaagcagataaagataaacaacaattgg |
2909341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 2832731 - 2832680
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaag |
125 |
Q |
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||||| |||||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
2832731 |
tcaatctcttgagattgcaaagaaaaaggatgaggaggaagcaaagaaaaag |
2832680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 2842889 - 2842940
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaag |
125 |
Q |
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||||| |||||| ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
2842889 |
tcaatctcttgagattgcaaagaaaaaggatgaggaggaagcaaagaaaaag |
2842940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 2884044 - 2883994
Alignment:
| Q |
185 |
ttgattgaggagaatgctgtgatacattattttagattggattgatttcag |
235 |
Q |
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||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
2884044 |
ttgattggggagaatgctgtcctacattaatttagattggattgatttcag |
2883994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 2829483 - 2829534
Alignment:
| Q |
74 |
tcaatatcttgaaattgcaaaggaaaaggaagaggaggaagcaaagaaaaag |
125 |
Q |
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||||| |||||| | ||||||| ||||||| ||||||||||||||||||||| |
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| T |
2829483 |
tcaatctcttgagaatgcaaagaaaaaggatgaggaggaagcaaagaaaaag |
2829534 |
T |
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