View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_153 (Length: 308)
Name: NF1199_low_153
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_153 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 27333552 - 27333813
Alignment:
| Q |
30 |
attctgacactcaaagtctttataaggttggatccgttcctttaaaattctgcaaatacacattgacgcttaagttaatttataaggtgtttgtgaggtt |
129 |
Q |
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| T |
27333552 |
attctgacactcaaagtctttataaggttggatccgttcctttaaaattctgcaaatacacattgacgcttaagtt----tataaggtgtttgtgaggtt |
27333647 |
T |
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| Q |
130 |
taaatattgaaaaataagcataccttgcggaatggtatctcctccttttattcatcacgtgaatttccttttttcgatctagaatcagctcttataagtt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27333648 |
taaatattgaaaaataagcataccttgcggaatggtatctcctccttttattcatcacgtgaatgtccttttttcgatctagaatcagctcttataagtt |
27333747 |
T |
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| Q |
230 |
agaaaacataattcccttatgcacaaataatcactagagattgatctttaggcacctagcaaatatt |
296 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27333748 |
cgaaaacataatt-ccttatgcacaaataatcactagagattgatctttaggcacctagcaaatatt |
27333813 |
T |
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