View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_154 (Length: 307)

Name: NF1199_low_154
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_154
NF1199_low_154
[»] chr5 (2 HSPs)
chr5 (60-230)||(6817467-6817638)
chr5 (60-93)||(29445151-29445184)
[»] chr4 (2 HSPs)
chr4 (60-93)||(3018356-3018389)
chr4 (141-193)||(53712457-53712509)
[»] chr3 (2 HSPs)
chr3 (60-93)||(14262035-14262068)
chr3 (60-92)||(45003496-45003528)
[»] chr2 (2 HSPs)
chr2 (60-93)||(26560555-26560588)
chr2 (60-92)||(15106067-15106099)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 6817467 - 6817638
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccctccatttaaatatagtgattggatttaaagcact-aaactgcatgccatgccaccaattcccggttc 158  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  6817467 taatattacgggaatgaaaagagatattaaccctacatttaaatatagtgattggatttaaagcaccgaaactgcatgccatgccaccaattcccggttc 6817566  T
Q  159 caacctatcaaatccaattaatgtagaggttttgctcaacaaaaaagaaaattaatgtagaggttttgggtt 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6817567 caacctatcaaatccaattaatgttgaggttttgctcaacaaaaaagaaaattaatgtagaggttttgggtt 6817638  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 29445151 - 29445184
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccct 93  Q
    ||||||||| ||||||||||||||||||||||||    
T  29445151 taatattacagggacgaaaagagatattaaccct 29445184  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 3018356 - 3018389
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccct 93  Q
    ||||||||| ||||||||||||||||||||||||    
T  3018356 taatattacagggacgaaaagagatattaaccct 3018389  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 53712509 - 53712457
Alignment:
Q  141 gccaccaattcccggttccaacctatcaaatccaattaatgtagaggttttgc 193  Q
    |||||||||| ||||| ||||| |||||  |||||||||| ||||||||||||    
T  53712509 gccaccaatttccggtcccaacatatcatttccaattaatatagaggttttgc 53712457  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 14262068 - 14262035
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccct 93  Q
    ||||||||| ||||||||||||||||||||||||    
T  14262068 taatattacagggacgaaaagagatattaaccct 14262035  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 45003528 - 45003496
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccc 92  Q
    |||||||||||||||||||||||||||| ||||    
T  45003528 taatattacggggacgaaaagagatatttaccc 45003496  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 26560588 - 26560555
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccct 93  Q
    ||||||||| ||||||||||||||||||||||||    
T  26560588 taatattacagggacgaaaagagatattaaccct 26560555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 15106099 - 15106067
Alignment:
Q  60 taatattacggggacgaaaagagatattaaccc 92  Q
    |||||||||||||||||||||||||||| ||||    
T  15106099 taatattacggggacgaaaagagatatttaccc 15106067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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