View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_164 (Length: 293)

Name: NF1199_low_164
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_164
NF1199_low_164
[»] chr7 (2 HSPs)
chr7 (53-199)||(37648984-37649130)
chr7 (258-293)||(37649174-37649209)
[»] chr4 (2 HSPs)
chr4 (258-293)||(25936681-25936716)
chr4 (258-293)||(52110015-52110050)
[»] chr3 (1 HSPs)
chr3 (258-293)||(13663154-13663189)
[»] chr2 (2 HSPs)
chr2 (258-293)||(45497253-45497288)
chr2 (258-293)||(45504995-45505030)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 37648984 - 37649130
Alignment:
Q  53 ggttcaaagttgcaactgtagaagagtagttcaatattttaagattgttatgaaaattgttttcaaaatatattcatttaattttataaaaattcaatat 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37648984 ggttcaaaattgcaactgtagaagagtagttcaatattttaagattgttatgtaaattgttttcaaaatatattcatttaattttataaaaattcaatat 37649083  T
Q  153 tacaagagtgagtgaatttttttatgaatttgtaatatggaattgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37649084 tacaagagtgagtgaatttttttatgaatttgtaatatggaattgac 37649130  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Original strand, 37649174 - 37649209
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  37649174 tgttggttaacaacaaaataacataacgttgtcaac 37649209  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 25936716 - 25936681
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  25936716 tgttggttaacaacaaaataacataacgttgtcaac 25936681  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 52110050 - 52110015
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  52110050 tgttggttaacaacaaaataacataacgttgtcaac 52110015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 13663189 - 13663154
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  13663189 tgttggttaacaacaaaataacataacgttgtcaac 13663154  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 45497288 - 45497253
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  45497288 tgttggttaacaacaaaataacataacgttgtcaac 45497253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 45505030 - 45504995
Alignment:
Q  258 tgttggtttacaacaaaataacataacgttgtcaac 293  Q
    |||||||| |||||||||||||||||||||||||||    
T  45505030 tgttggttaacaacaaaataacataacgttgtcaac 45504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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