View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_168 (Length: 291)

Name: NF1199_low_168
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_168
NF1199_low_168
[»] chr6 (1 HSPs)
chr6 (1-282)||(25520794-25521075)
[»] chr3 (1 HSPs)
chr3 (1-282)||(8525005-8525298)
[»] chr5 (10 HSPs)
chr5 (26-282)||(41711586-41711839)
chr5 (5-276)||(42125556-42125821)
chr5 (115-282)||(34230688-34230855)
chr5 (115-276)||(34238743-34238904)
chr5 (129-282)||(42130775-42130928)
chr5 (137-282)||(41569924-41570069)
chr5 (26-97)||(42130948-42131019)
chr5 (52-97)||(42119134-42119179)
chr5 (47-97)||(34230632-34230682)
chr5 (47-97)||(34238687-34238737)
[»] chr4 (2 HSPs)
chr4 (139-282)||(11120324-11120467)
chr4 (1-93)||(11120516-11120611)
[»] chr2 (2 HSPs)
chr2 (137-276)||(12250377-12250516)
chr2 (28-74)||(12250522-12250568)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 25520794 - 25521075
Alignment:
Q  1 ttttctctttcattttccatccttctcttctttcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactataaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25520794 ttttctctttcattttccatccttctcttctttcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactataaat 25520893  T
Q  101 tctgaatcttcttatccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgcca 200  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  25520894 tctgaatcttcttatccttgtgatgaatctcttctgaaaacagcaacatggaaatatgggactgattgctgctcatggcatggtgtcacatgcgacacca 25520993  T
Q  201 cttttggtcgcgtgattggcctcaaccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  25520994 cttttggtcgcgtgattggcctcaaccttggctgtgaaggcctccaaggtatattccatcctaatagtactcttttccatct 25521075  T

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Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 8525298 - 8525005
Alignment:
Q  1 ttttctctttcattttccatccttctcttctt---tcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 97  Q
    ||||||||| |||||||||||||| |||||||   |||||||||| ||||||| | |||||||||||||| ||||||| || || || ||||||||||||    
T  8525298 ttttctcttccattttccatccttttcttcttctttcaatttttcttgccatcattatgagagctctgctttgcttcatttcaagtcatccttcactata 8525199  T
Q  98 aattctgaatcttcttatcctt------gtgatgaatctcttcta---aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtca 188  Q
    ||||||||| || ||||| |||      |||||||||||| |||    |||||| ||||||||||| |||||| |||||||||||||||| |||||||||    
T  8525198 aattctgaacctgcttattcttatttttgtgatgaatctcgtcttttgaaaacagcaacatggaaaaatgagattgattgctgctcatgggatggtgtca 8525099  T
Q  189 catgcgacgccacttttggtcgcgtgattggcctcaaccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    | || ||| |||    ||||| |||||||||||||||||||||||||||||| |||||||| ||| |  ||||||| ||||| ||||| |||||    
T  8525098 cgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtgaaggtcttcaaggcatactcaatcctaacagtacccttttccatct 8525005  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 41711586 - 41711839
Alignment:
Q  26 tcttctttcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactataaattctgaatcttcttatccttgtgatg 125  Q
    |||||||||||||| |||||||||| ||||||||| |||||  ||||||| || || || || ||||||||  |  || |   || | ||  ||||| ||    
T  41711586 tcttctttcaatttctcatgccatcatgatgagagttctgcattgcttcaattcaagtcatcattcactatgcacactta---ttatgatggttgtggtg 41711682  T
Q  126 aatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaa 225  Q
    || |||||||||||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||| ||| ||   | |||||||||| ||||||||||    
T  41711683 aacctcttctaaaaacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaa 41711782  T
Q  226 ccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||    
T  41711783 ccttggctgtgatggccttcaaggtatattccatcctaataatactcttttccatct 41711839  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 42125821 - 42125556
Alignment:
Q  5 ctctttcattttccatccttctcttctt---tcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactataaatt 101  Q
    ||||| ||||||||||||||||||||||   ||||||||||||| |||| |||||||||||||||| |||||||||| ||| ||||  |   |||         
T  42125821 ctcttccattttccatccttctcttcttctttcaatttttcatgtcatcatgatgagagctctgctttgcttcagttcaaaacctctat---tat----- 42125730  T
Q  102 ctgaatcttcttatccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccac 201  Q
     || ||||| |||| ||||||||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||| |||||||||| || ||  |||     
T  42125729 -tgcatctttttattcttgtgatggatctcttctgaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccat 42125631  T
Q  202 ttttggtcgcgtgattggcctcaaccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttt 276  Q
       | ||| ||||||||||||||| ||||||||||||||||||||||||| | | |||||||| ||||| |||||    
T  42125630 cactcgtcacgtgattggcctcaatcttggctgtgaaggccttcaaggtaaactacatcctaacagtaccctttt 42125556  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 115 - 282
Target Start/End: Original strand, 34230688 - 34230855
Alignment:
Q  115 tccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtg 214  Q
    |||||||| | |||||| | | |||||| ||||||||||| ||| |||||||||||||||||||||||||||||| || ||| ||   | ||||| |||     
T  34230688 tccttgtgttaaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtc 34230787  T
Q  215 attggcctcaaccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    |||||||| |||||||||||||||||| ||||||||||| | |||||||||||||| ||||| |||||    
T  34230788 attggccttaaccttggctgtgaaggctttcaaggtatactccatcctaatagtacccttttccatct 34230855  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 276
Target Start/End: Original strand, 34238743 - 34238904
Alignment:
Q  115 tccttgtgatgaatctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtg 214  Q
    |||||||| | |||||| | | |||||| ||||||||||| ||| |||||||||||||||||||||||||||||| || ||| ||   | ||||| |||     
T  34238743 tccttgtgttaaatctcctatgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtc 34238842  T
Q  215 attggcctcaaccttggctgtgaaggccttcaaggtatatttcatcctaatagtacactttt 276  Q
    |||||||| |||||||| ||||||||| ||||||||||| | |||||||||||||| |||||    
T  34238843 attggccttaaccttggttgtgaaggctttcaaggtatactccatcctaatagtaccctttt 34238904  T

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Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 42130928 - 42130775
Alignment:
Q  129 ctcttctaaaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaacct 228  Q
    ||||||| |||||| ||||||||||| ||| ||||||||||||||||||| |||| ||||| || ||| |    | ||||| |||||||| |||||||||    
T  42130928 ctcttcttaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaacct 42130829  T
Q  229 tggctgtgaaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    ||||||||||||||||  ||||| |||  ||||||||||||| |||||||||||    
T  42130828 tggctgtgaaggccttacaggtacattcaatcctaatagtaccctttttcatct 42130775  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 41569924 - 41570069
Alignment:
Q  137 aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgtg 236  Q
    |||||| |||||||||||  ||||||  |||| || ||||||||||||||||| ||||||||    | ||||||||||||||| ||| ||||||||||||    
T  41569924 aaaacatcaacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgtg 41570023  T
Q  237 aaggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    || |||||||||||| | || ||||||| |  || |||||||||||    
T  41570024 aatgccttcaaggtaaaatttatcctaacaacactctttttcatct 41570069  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 42131019 - 42130948
Alignment:
Q  26 tcttctttcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 97  Q
    ||||||||||||||||||||||||| | |||| ||||||||| |||||||||| || || ||||||| ||||    
T  42131019 tcttctttcaatttttcatgccatcataatgacagctctgctttgcttcagttcaagtcatccttcattata 42130948  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 42119179 - 42119134
Alignment:
Q  52 tgatgagagctctgctctgcttcagtttaaatcctccttcactata 97  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  42119179 tgatgagagctctgctctgcttcagttcaagtcctccttcactata 42119134  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 34230632 - 34230682
Alignment:
Q  47 catcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 97  Q
    |||| ||||||||||| |||| |||||||||| || |||||||||||||||    
T  34230632 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34230682  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 34238687 - 34238737
Alignment:
Q  47 catcgtgatgagagctctgctctgcttcagtttaaatcctccttcactata 97  Q
    |||| ||||||||||| |||| |||||||||| || |||||||||||||||    
T  34238687 catcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34238737  T

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Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 282
Target Start/End: Complemental strand, 11120467 - 11120324
Alignment:
Q  139 aacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgtgaa 238  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||||| |||  | ||||||||||||||||||||| ||||||||||||    
T  11120467 aacaacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 11120368  T
Q  239 ggccttcaaggtatatttcatcctaatagtacactttttcatct 282  Q
    || |||||||| ||||| ||||| |||||||| ||||| |||||    
T  11120367 ggtcttcaaggcatattacatccgaatagtacccttttccatct 11120324  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11120611 - 11120516
Alignment:
Q  1 ttttctctttcattttccatccttctcttctt---tcaatttttcatgccatcgtgatgagagctctgctctgcttcagtttaaatcctccttcac 93  Q
    ||||||||||||||||||||  ||||||||||   ||||||||||||||||||  |||||||||| |||| ||||||||||  | |||||||||||    
T  11120611 ttttctctttcattttccattattctcttcttctttcaatttttcatgccatcacgatgagagctttgctttgcttcagttcgagtcctccttcac 11120516  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 276
Target Start/End: Complemental strand, 12250516 - 12250377
Alignment:
Q  137 aaaacaacaacatggaaatatgagactgattgctgctcatggcatggtgtcacatgcgacgccacttttggtcgcgtgattggcctcaaccttggctgtg 236  Q
    |||||| |||||||| || ||| ||||||||||||||||||||||||||||||||| ||| | |  | |||||  |||||||||||| ||||||||  ||    
T  12250516 aaaacagcaacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggcctcgaccttggcgatg 12250417  T
Q  237 aaggccttcaaggtatatttcatcctaatagtacactttt 276  Q
    |||||||| | |||||||| || ||||||||||| |||||    
T  12250416 aaggccttgatggtatattacaacctaatagtaccctttt 12250377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 12250568 - 12250522
Alignment:
Q  28 ttctttcaatttttcatgccatcgtgatgagagctctgctctgcttc 74  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||    
T  12250568 ttctttcaatttttcatgtcatcatgacgagagctctgctctgcttc 12250522  T

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