View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_17 (Length: 618)
Name: NF1199_low_17
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 380
Target Start/End: Original strand, 31896412 - 31896772
Alignment:
| Q |
30 |
gatgtaaaggtcaccttttggaggtggcttgcagaattccgaaatagttgat---aatataaaagtcacct--tctagctgactttttgataggaaaaag |
124 |
Q |
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| T |
31896412 |
gatgtaaaggtcacctcttggaggtggcttgcagaattccgaaatagttgatgataatataaaagtcacctcttctagctgactttttgataggaaaaag |
31896511 |
T |
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| Q |
125 |
gtagagtcttagttttatgttgagtgattttcaaaccatcttctttgtttacttttctaagacttcttcttagttttagtttgggtcgaatatgtatgtc |
224 |
Q |
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| T |
31896512 |
gtagagtcttagttttatgttgattggttttcaaaccatcttctttgtttacttttctaagacttcttcttagtttttgtttgggtcgagtatgtatgtc |
31896611 |
T |
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| Q |
225 |
tcgtacttctccaagtttaaatgagtaaaatactatttataagtctctctttttaatcaatatataacattttaccattnnnnnnntatcagtgtgtaat |
324 |
Q |
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| T |
31896612 |
tcatacttctccaaatttaaatgagtaaaatactatttataagtctctctttttaatcaatatataacattttaccattaaaaaaatatcagtgtgtaat |
31896711 |
T |
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| Q |
325 |
tttcatgcaatgtaattttacggtatttt-----ttcttcaaatacacactatcatgccag |
380 |
Q |
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| T |
31896712 |
tttcatgcaatgtaattttacggttttttttttcttcttcaaatacacactaacatgccag |
31896772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 408 - 610
Target Start/End: Original strand, 31900091 - 31900292
Alignment:
| Q |
408 |
attgacgaattcaactagttttgtaacctgttttgaagtcaacaatgcatgaccaaagaaagagtcaccgttgtttaccgaannnnnnngcttcatatat |
507 |
Q |
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| T |
31900091 |
attgacgaattcaactagttttgtaagctgttttgaagtcaacaatgcatgaccaaagacagagtcaccgttgtttaccgaaatattttgcttcatatat |
31900190 |
T |
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| Q |
508 |
aggtgcaataatgtaacgtcatttttatattttagggtgctctaatgaaatgtcatcatcatatcattcatatggtaacatgattgtattgtgtagtatt |
607 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
31900191 |
aggtgcaataatg-aacgtcttttttatattttagggtgctctaatgaaatgtcatcatcatatcattcatatggtaacatgattgtattgtctattatt |
31900289 |
T |
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| Q |
608 |
atc |
610 |
Q |
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| T |
31900290 |
atc |
31900292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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