View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_173 (Length: 281)
Name: NF1199_low_173
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_173 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 53982742 - 53983012
Alignment:
| Q |
11 |
acaatatccgattcattgacaaagaagaagaataggtcagcctgtcacaattggattatgaggacctttaaatacactcatacattgatccgccgaggaa |
110 |
Q |
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| T |
53982742 |
acaaaatccgattcattgacaaagaagaagaataggtcagcctgtcacaattggattatgaggacctttaaatacactcatacattgatccgccgaggaa |
53982841 |
T |
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| Q |
111 |
tgatgctaaatgaatgaacacaacattagaaattattaagtcattttaaaattatataaacatatcgttgtcaatgttattcatagaaagagtttcactt |
210 |
Q |
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| T |
53982842 |
tgatgctaaatgaatgaacacaacattagaaattattaagtcattttaaaattatataaacatatcgttgtcaatgttattcatagaaagagtttcactt |
53982941 |
T |
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| Q |
211 |
ggattactcaaacaattaagaacgaaggactttgcgcacagttgtgagtttaaaatctctacacatagact |
281 |
Q |
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| T |
53982942 |
ggattactcaaacaattaagaatgaaggactttgcgcacagttgtgagtttaaaatctctacacatagact |
53983012 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 54000921 - 54000985
Alignment:
| Q |
61 |
ttggattatgaggacctttaaatacactcatacattgatccgccgaggaatgatgctaaatgaat |
125 |
Q |
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| T |
54000921 |
ttggatcaagaggacctttaaatgcactcatacattgatctgccgaggaataatgctgaatgaat |
54000985 |
T |
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