View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_177 (Length: 274)
Name: NF1199_low_177
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_177 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 13605629 - 13605835
Alignment:
| Q |
30 |
gatattactataaaaaatcgagatctcattatcatggtgtgttcctttttcatccttgagaatgccagtttcattgtttatttatttaccaactgaaaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13605629 |
gatattactataaaaaatcgagatctcattatcatggtgtgttcctttttcatccttgagaatgccagtttcattgtttatttatttaccaactgaaaac |
13605728 |
T |
|
| Q |
130 |
atgttatgaaatcctgaatttgtaggaatctttttcagtgttatatcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatcta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13605729 |
atgttatgaaatcctgaatttgtaggaatctttttcagtgttatatcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatcta |
13605828 |
T |
|
| Q |
230 |
tatatat |
236 |
Q |
| |
|
||||||| |
|
|
| T |
13605829 |
tatatat |
13605835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 31214047 - 31214161
Alignment:
| Q |
35 |
tactataaaaaatcgagatctcattatcatggtgtgttcctttttcatcct---------tgagaatgccagtttcattgtttatttatttaccaactga |
125 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
31214047 |
tactacaaaaaatcaagatctcattatcatggtgtgttcctttttcatcctcttgagagttgagaataccagtttcattgtttatttatttaccagctga |
31214146 |
T |
|
| Q |
126 |
aaacatgttatgaaa |
140 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31214147 |
aaacatgttatgaaa |
31214161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 31201591 - 31201652
Alignment:
| Q |
174 |
atcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatctatatata |
235 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201591 |
atcaatcaaatacttttaaattctcaaaaatttaaagcaattgaaacaaacatctatatata |
31201652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 31201514 - 31201582
Alignment:
| Q |
41 |
aaaaaatcgagatctcattatcatggtgtgttcctttttcatccttgagaatgccagtttcattgttta |
109 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31201514 |
aaaaaaccaagatctcattatcatggtgtgttcctttttcatccttgagaataccagtttcattgttta |
31201582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 31214311 - 31214355
Alignment:
| Q |
191 |
aaattctctaaaatttaaagcaattgaaacaaacatctatatata |
235 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31214311 |
aaattctctaaaatttaaatcaattgaaacaaacatctatatata |
31214355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University