View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_178 (Length: 274)

Name: NF1199_low_178
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_178
NF1199_low_178
[»] chr3 (8 HSPs)
chr3 (182-266)||(20369041-20369125)
chr3 (182-259)||(52695375-52695451)
chr3 (182-259)||(35053601-35053677)
chr3 (182-258)||(40615118-40615193)
chr3 (182-245)||(53530484-53530545)
chr3 (182-249)||(46979142-46979208)
chr3 (184-250)||(32835477-32835542)
chr3 (218-254)||(7628973-7629009)
[»] chr5 (9 HSPs)
chr5 (182-266)||(32076304-32076387)
chr5 (182-264)||(31210624-31210705)
chr5 (182-266)||(16755841-16755926)
chr5 (182-266)||(31113766-31113850)
chr5 (182-253)||(28470108-28470178)
chr5 (182-249)||(36906865-36906930)
chr5 (182-254)||(29230861-29230932)
chr5 (212-259)||(39935914-39935961)
chr5 (182-250)||(19099835-19099903)
[»] chr2 (10 HSPs)
chr2 (182-268)||(21813068-21813153)
chr2 (182-259)||(30485860-30485937)
chr2 (182-266)||(7018095-7018176)
chr2 (182-266)||(35306359-35306442)
chr2 (182-259)||(41324163-41324239)
chr2 (182-266)||(17328986-17329069)
chr2 (182-266)||(30382580-30382663)
chr2 (188-254)||(42794558-42794623)
chr2 (205-266)||(44364715-44364774)
chr2 (182-254)||(37272693-37272764)
[»] chr7 (7 HSPs)
chr7 (182-266)||(2185513-2185596)
chr7 (182-266)||(47843538-47843622)
chr7 (182-266)||(3751267-3751349)
chr7 (182-266)||(22542707-22542790)
chr7 (182-254)||(45492440-45492511)
chr7 (182-265)||(43728194-43728276)
chr7 (182-254)||(42040240-42040311)
[»] chr6 (4 HSPs)
chr6 (182-266)||(32340045-32340128)
chr6 (190-254)||(22297148-22297211)
chr6 (220-258)||(6108245-6108283)
chr6 (205-266)||(22054330-22054389)
[»] chr1 (8 HSPs)
chr1 (182-254)||(14287291-14287362)
chr1 (182-254)||(25294419-25294490)
chr1 (185-249)||(17116523-17116586)
chr1 (182-266)||(38682688-38682770)
chr1 (182-254)||(31513410-31513481)
chr1 (182-254)||(22790930-22791001)
chr1 (182-254)||(40032902-40032973)
chr1 (182-266)||(41827942-41828024)
[»] chr4 (12 HSPs)
chr4 (205-266)||(10037720-10037781)
chr4 (182-266)||(40217830-40217914)
chr4 (182-253)||(19721491-19721561)
chr4 (212-266)||(28101777-28101831)
chr4 (196-254)||(35103292-35103349)
chr4 (184-266)||(47922775-47922856)
chr4 (182-266)||(7208294-7208377)
chr4 (182-250)||(15476531-15476598)
chr4 (182-238)||(35823301-35823356)
chr4 (207-254)||(45661959-45662006)
chr4 (182-250)||(2242669-2242737)
chr4 (186-254)||(2295645-2295712)
[»] chr8 (10 HSPs)
chr8 (193-253)||(26079541-26079600)
chr8 (216-266)||(31431097-31431147)
chr8 (182-239)||(24728353-24728409)
chr8 (182-254)||(11991016-11991087)
chr8 (182-254)||(18928343-18928414)
chr8 (220-259)||(12007029-12007068)
chr8 (184-259)||(37232050-37232124)
chr8 (182-247)||(11789163-11789227)
chr8 (182-266)||(16591195-16591280)
chr8 (182-254)||(9410137-9410207)
[»] scaffold0565 (1 HSPs)
scaffold0565 (182-254)||(8170-8241)
[»] scaffold0027 (1 HSPs)
scaffold0027 (212-266)||(8300-8354)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 20369125 - 20369041
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20369125 attttaatcacatgtattatttcttaaaatattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttc 20369041  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 52695451 - 52695375
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    ||||||||||||| |||||||| | |||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  52695451 attttgatcacatctattattt-taaaaaaattgtgacatttataataatataataataaagagtaatcaatgcttat 52695375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 35053677 - 35053601
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    |||||||| |||| ||||||||||||||| ||| ||||||||| ||| ||||||| | |||||||||||||| |||||    
T  35053677 attttgataacatgtattatttcttaaaa-attatgacttttacaataatataattacaaagagtaatcaatccttat 35053601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 40615118 - 40615193
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgctta 258  Q
    ||||||||||||  |||||||| |||| | |||| |||||||||||| |||||||||||| ||||||| ||||||||    
T  40615118 attttgatcacaagtattattt-ttaagaaattgcgacttttataataatataataataatgagtaattaatgctta 40615193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 53530545 - 53530484
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagag 245  Q
    ||||||||||||| ||||||||  | ||| ||||||||||||||||| ||||||||||||||||    
T  53530545 attttgatcacatgtattattt--tcaaaaattgtgacttttataataatataataataaagag 53530484  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 46979208 - 46979142
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaat 249  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||    
T  46979208 attttgatcacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaat 46979142  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 32835477 - 32835542
Alignment:
Q  184 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatc 250  Q
    ||||||||||||||| |||| ||  || ||| ||||||||||||| ||||||||||||||| |||||    
T  32835477 tttgatcacatatataattttttttaa-attatgacttttataataatataataataaagattaatc 32835542  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 7629009 - 7628973
Alignment:
Q  218 acttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  7629009 acttttataataatataataatgaagagtaatcaatg 7628973  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 32076387 - 32076304
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  32076387 attttgatcacatgtattattt-ttaaaaaattgtgatttttataataatataataataaagagtaatcaatgtttattttcttc 32076304  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 31210705 - 31210624
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattct 264  Q
    ||||||||||||| |||| ||| | |||||||| ||||||||||||| |||||||||| ||||||||  ||||||||| ||||    
T  31210705 attttgatcacatgtatttttt-tcaaaacattttgacttttataataatataataatgaagagtaactaatgcttattttct 31210624  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 16755926 - 16755841
Alignment:
Q  182 attttgatcacatatattatttctta-aaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||||||||  ||||||| ||  ||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||| ||||||    
T  16755926 attttgatcacatgcattattttttttaaaaattgtaacttttataataatataacaatgaagagtaatcaatgcttattttcttc 16755841  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 31113850 - 31113766
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||| ||||||| |||||||| | |||| ||||||||||||||||| | | |||||| |||||||||| ||| |||| ||||||    
T  31113850 attttcatcacatgtattatttttaaaaaaattgtgacttttataataagacaataatgaagagtaatcgatgtttattttcttc 31113766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 28470178 - 28470108
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaat 253  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||| | |||||||||| |||| ||||||||    
T  28470178 attttaatcacatgtattattt-ttaaaaaattgtgacttttatattaatataataatgaagaataatcaat 28470108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 36906865 - 36906930
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaat 249  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||||| |||||||||    
T  36906865 attttgatcatatatattattt-ttaaaa-attgtgacttttataataatagaataatgaagagtaat 36906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 29230932 - 29230861
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| |||||||| | |||| ||| | ||||||||||| ||| |||||| ||||||||||||||    
T  29230932 attttgatcacatgtattattt-tgaaaaaattataacttttataataatacaataatgaagagtaatcaatg 29230861  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 39935914 - 39935961
Alignment:
Q  212 attgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    ||||||||||||||||| |||||||||||  |||||||||||| ||||    
T  39935914 attgtgacttttataataatataataatagggagtaatcaatgtttat 39935961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 19099903 - 19099835
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatc 250  Q
    ||||||||||||| |||||| | | |||| ||||| |||||| |||| ||| |||||| ||||||||||    
T  19099903 attttgatcacatgtattatatttaaaaaaattgtaacttttttaataatacaataatgaagagtaatc 19099835  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 21813068 - 21813153
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttcga 268  Q
    ||||||||||||| |||||||| | |||| ||||||||||||||||| |||||||||| ||||||||||||| || || ||||||||    
T  21813068 attttgatcacatgtattattt-taaaaaaattgtgacttttataataatataataatgaagagtaatcaatactgattttcttcga 21813153  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 30485860 - 30485937
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    ||||||||||||  ||||| || || ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  30485860 attttgatcacacgtattaattttttaaaaattttgacttttataataatataataataaagagtaatcaatgcttat 30485937  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 7018095 - 7018176
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| |||||||| |||||| ||||  ||||||||||| |||||||||| |||||||||||||| |||| ||||||    
T  7018095 attttgatcacatgtattattttttaaaa-attg--acttttataataatataataatgaagagtaatcaatgtttattttcttc 7018176  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 35306359 - 35306442
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||| ||||||||||||  |||||| ||||| ||||||||||| |||||||||| || ||||||||||| |||| ||||||    
T  35306359 attttgatgacatatattattatttaaaa-attgtcacttttataataatataataatgaaaagtaatcaatgtttattttcttc 35306442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 41324163 - 41324239
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    ||||||||||||| |||||||| |||||| ||||  ||||||||||| |||||||||| ||| |||||||||| ||||    
T  41324163 attttgatcacatgtattattt-ttaaaaaattgatacttttataataatataataatgaagggtaatcaatgtttat 41324239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 17328986 - 17329069
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||| ||||||| |||||||| ||||||  |||||||||||||||| | ||||||||||| ||||||| ||| |||| ||||||    
T  17328986 attttcatcacatgtattattttttaaaat-ttgtgacttttataataagataataataaaaagtaatcgatgtttattttcttc 17329069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 30382663 - 30382580
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||| | |||||||| || ||| ||||  ||||||||||| |||||||||||||||||||| ||| ||||| ||||||    
T  30382663 attttgatcacctgtattatttttttaaa-attgcaacttttataataatataataataaagagtaattaatacttattttcttc 30382580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 42794623 - 42794558
Alignment:
Q  188 atcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| ||||||||||||||    
T  42794623 atcacatgtattattttttaaaa-attataacttttataataatacaataatgaagagtaatcaatg 42794558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 44364715 - 44364774
Alignment:
Q  205 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||| ||||||||||  ||||| ||||||||||||||||||| ||||| |||| ||||||    
T  44364715 ttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttc 44364774  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 37272764 - 37272693
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    |||||||||| || |||||||| ||| || ||||| | |||||||||  ||||||||| ||||||||||||||    
T  37272764 attttgatcatatgtattattt-ttacaaaattgttagttttataatattataataatgaagagtaatcaatg 37272693  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 2185596 - 2185513
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||| | |||||||| |||||||||||||| |||| ||||||    
T  2185596 attttcatcacatgtattattttttaaaa-attgtgacttttataattagataataatgaagagtaatcaatgtttattttcttc 2185513  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 47843622 - 47843538
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| |||||||| | |||| |||||||||||||||||  ||||||||| ||| |||||||||| |||| ||||||    
T  47843622 attttgatcacatgtattatttataaaaaaattgtgacttttataatagtataataatgaagggtaatcaatgtttattttcttc 47843538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 3751349 - 3751267
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||| |||| |||| ||||||||||  |||||||||||||||| |||||||||| |||| ||||||||| |||| ||||||    
T  3751349 attttgattacatgtattttttcttaaaa--ttgtgacttttataataatataataatgaagaataatcaatgattattttcttc 3751267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 22542790 - 22542707
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||| | || |||||||| |||||| ||||||||||||||||  |||||||||| |||||||||||||| |||| ||||||    
T  22542790 attttgattagatgtattattt-ttaaaaaattgtgacttttataagaatataataatgaagagtaatcaatgtttattttcttc 22542707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 45492440 - 45492511
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||| ||||||| |||||||| |||||| ||| ||||||||||||| | |||||||| ||||||||||||||    
T  45492440 attttcatcacatgtattattt-ttaaaaaattatgacttttataataagataataatgaagagtaatcaatg 45492511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 43728194 - 43728276
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattctt 265  Q
    ||||||||||||| |||||||| | |||| || | |||||||||||| |||||||||| ||||||||||| || |||| |||||    
T  43728194 attttgatcacatgtattatttttcaaaa-atcgcgacttttataataatataataattaagagtaatcagtgtttattttctt 43728276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 42040311 - 42040240
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| ||||||||  ||||| ||| | ||||||||||| ||| |||||| ||||||||||||||    
T  42040311 attttgatcacatgtattattttctaaaa-attataacttttataataatacaataatgaagagtaatcaatg 42040240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 32340128 - 32340045
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||| |||| |||||||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||| ||| ||||||    
T  32340128 attttgattacatgtattattt-ttaaaaaattgtgacttttataataatataataatgaagagtaaccaatgcatattttcttc 32340045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 22297211 - 22297148
Alignment:
Q  190 cacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||| |||||||| |||||| |||| |||||||||||| |||||| ||||||||||||||||||    
T  22297211 cacatgtattattttttaaaa-attgcgacttttataataatataacaataaagagtaatcaatg 22297148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 6108283 - 6108245
Alignment:
Q  220 ttttataatgatataataataaagagtaatcaatgctta 258  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  6108283 ttttataataatataataatgaagagtaatcaatgctta 6108245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 22054330 - 22054389
Alignment:
Q  205 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||| ||||||||||  ||||| ||||||||||||||||||| ||||| |||| ||||||    
T  22054330 ttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttc 22054389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 14287291 - 14287362
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  14287291 attttcatcacatgtattattt-ttaaaaaattgtgacttttataattagataataataaagagtaatcaatg 14287362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 25294490 - 25294419
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| ||||||||||||||    
T  25294490 attttgatcacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaatcaatg 25294419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 17116523 - 17116586
Alignment:
Q  185 ttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaat 249  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||    
T  17116523 ttgatcacatatattattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaat 17116586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 38682770 - 38682688
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||||| || |||||||| ||||||  ||||||| |||||||| | ||||| || |||||||||||||| |||| ||||||    
T  38682770 attttgatcatatttattattttttaaaa--ttgtgacatttataataagataattatgaagagtaatcaatgtttattttcttc 38682688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 31513481 - 31513410
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    |||||||  |||| |||||||| |||||| ||||| ||||||||||| ||| |||||| ||||||||||||||    
T  31513481 attttgacaacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaatcaatg 31513410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 22791001 - 22790930
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| |||||||| ||  || |||||||||||||| || ||||| || | ||||||||||||||    
T  22791001 attttgatcacatgtattattttttgtaa-attgtgacttttatgattatatagtattgaagagtaatcaatg 22790930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 40032902 - 40032973
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||| ||||| ||||||||  ||||| ||||| ||||||||||| || ||||||| ||||||||| ||||    
T  40032902 attttgagcacatgtattattttgtaaaa-attgttacttttataataatttaataatgaagagtaataaatg 40032973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 41827942 - 41828024
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| |||||||| || ||| ||||| |||||||| || ||| |||||| ||||||||| |||||| || ||||||    
T  41827942 attttgatcacatgtattatttttttaaa-attgtaacttttattat-atacaataatgaagagtaattaatgctaattttcttc 41828024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 10037781 - 10037720
Alignment:
Q  205 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  10037781 ttaaaaaattatgacttttataataatataataataaagagtaatcaatgctaattttcttc 10037720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 40217830 - 40217914
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||| |||| ||||||||||| | |||| ||||||||||||||||| |||||||  | |||||||||||||| |||| ||||||    
T  40217830 attttaatcatatatattatttttaaaaaaattgtgacttttataataatataatcttgaagagtaatcaatgtttattttcttc 40217914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 19721561 - 19721491
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaat 253  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||||||    
T  19721561 attttgatcacatgtattattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaatcaat 19721491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 28101831 - 28101777
Alignment:
Q  212 attgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||| ||||||    
T  28101831 attgtgacatttatactaatataataataaagagtaatcaatgcttattttcttc 28101777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 35103349 - 35103292
Alignment:
Q  196 tattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    |||||||| |||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  35103349 tattattttttaaaa-attgtaacttttataataatacaataataaagagtaatcaatg 35103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 47922856 - 47922775
Alignment:
Q  184 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||| |||||||| ||||||   ||  ||||||||||| ||| |||||| ||||||||||||||||||| ||||||    
T  47922856 tttgatcacatgtattattt-ttaaaaatctgaaacttttataataatacaataatgaagagtaatcaatgcttattttcttc 47922775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 7208377 - 7208294
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| ||| |||| |||||| ||||  | ||||||||| |||| ||||| |||||||||||||| |||| ||||||    
T  7208377 attttgatcacatgtatcattt-ttaaaaaattgatagttttataataatatgataatgaagagtaatcaatgtttattttcttc 7208294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 15476598 - 15476531
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatc 250  Q
    ||||||||||||| |||||||  |||||| ||||| ||||||||||| ||| |||||| ||||||||||    
T  15476598 attttgatcacatgtattattgtttaaaa-attgtaacttttataataatacaataatgaagagtaatc 15476531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 35823356 - 35823301
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataa 238  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||| | |||||||    
T  35823356 attttgatcacatgtattattttttaaaa-attgtgacttttataataacataataa 35823301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 45661959 - 45662006
Alignment:
Q  207 aaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    |||| ||||||||||||||||| |||||||||| || |||||||||||    
T  45661959 aaaaaattgtgacttttataataatataataatgaaaagtaatcaatg 45662006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 2242737 - 2242669
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatc 250  Q
    ||||||||||||| |||||||| ||   | ||||| ||||||||||| ||| |||||| ||||||||||    
T  2242737 attttgatcacatgtattatttttttttaaattgtaacttttataataatacaataatgaagagtaatc 2242669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 2295645 - 2295712
Alignment:
Q  186 tgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||| ||| |||| |||||| ||||| ||||||||||| ||| |||||| ||||||||| ||||    
T  2295645 tgatcacatgtataattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaattaatg 2295712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 26079541 - 26079600
Alignment:
Q  193 atatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaat 253  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  26079541 atatattattttttaaaa-attgtgacttttataataatataataatgaagagtaatcaat 26079600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 31431147 - 31431097
Alignment:
Q  216 tgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||| ||||||    
T  31431147 tgacttttataataatataatcataaagattaatcaatgcttattttcttc 31431097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 24728409 - 24728353
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataat 239  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||| | ||||||||    
T  24728409 attttcatcacatatattattt-ttaaaaaattgtgacttttataataagataataat 24728353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 11991016 - 11991087
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||  | |||||| | |||| ||||||||||||||||| | |||||||| ||||||||||||||    
T  11991016 attttgatcacacgttttattt-taaaaaaattgtgacttttataataaaataataatgaagagtaatcaatg 11991087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 18928414 - 18928343
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| |||||||| |  ||| ||| ||||||||||| | ||||||||||||||| |||||||||    
T  18928414 attttgatcacatgtattatttttgtaaa-attttgacttttatattaatataataataaagaataatcaatg 18928343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 12007029 - 12007068
Alignment:
Q  220 ttttataatgatataataataaagagtaatcaatgcttat 259  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  12007029 ttttataataatataataatcaagagtaatcaatgcttat 12007068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 37232050 - 37232124
Alignment:
Q  184 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttat 259  Q
    |||||||||||||||||||| ||  || ||||||||||||||  | ||||| || | |||||||||||||||||||    
T  37232050 tttgatcacatatattattttttgtaa-attgtgacttttatgcttatatagtattgaagagtaatcaatgcttat 37232124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 11789227 - 11789163
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagta 247  Q
    ||||||||||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| |||||||    
T  11789227 attttgatcacatgtattattt-ttaaaaaattataacttttataataatacaataatgaagagta 11789163  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 16591280 - 16591195
Alignment:
Q  182 attttgatcacatatattatttcttaaaac-attgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||| ||||||||   ||||  |||| || ||||||||| |||||||||| ||||||||||||| || || ||||||    
T  16591280 attttgatcacatctattattttaaaaaaagattgcgagttttataataatataataatgaagagtaatcaatactgattttcttc 16591195  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 9410137 - 9410207
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||||||||| ||| |||| |||||| ||||| ||||||| ||| ||| |||||| ||||||||||||||    
T  9410137 attttgatcacatgtataattt-ttaaaa-attgtaacttttacaataatacaataatgaagagtaatcaatg 9410207  T

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Target: scaffold0565 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8170 - 8241
Alignment:
Q  182 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 254  Q
    ||||||| ||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| ||||||||||||||    
T  8170 attttgaccacatgtattattt-ttaaaaaattataacttttataataatacaataatgaagagtaatcaatg 8241  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 8300 - 8354
Alignment:
Q  212 attgtgacttttataatgatataataataaagagtaatcaatgcttatattcttc 266  Q
    ||||||||||||||||| | |||||||| || | |||||||||||||| ||||||    
T  8300 attgtgacttttataataacataataatgaaaaataatcaatgcttattttcttc 8354  T

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