View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_179 (Length: 271)

Name: NF1199_low_179
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_179
NF1199_low_179
[»] chr3 (2 HSPs)
chr3 (152-241)||(29122762-29122851)
chr3 (61-106)||(14553497-14553542)
[»] chr5 (9 HSPs)
chr5 (53-140)||(37429085-37429172)
chr5 (61-140)||(37640225-37640304)
chr5 (61-106)||(37400540-37400585)
chr5 (61-106)||(37533487-37533532)
chr5 (61-106)||(37594711-37594756)
chr5 (61-106)||(37697174-37697219)
chr5 (61-106)||(37703055-37703100)
chr5 (61-106)||(37824282-37824327)
chr5 (61-106)||(37712011-37712056)
[»] chr7 (1 HSPs)
chr7 (152-198)||(38196108-38196154)
[»] chr4 (2 HSPs)
chr4 (61-106)||(24217468-24217513)
chr4 (61-106)||(16842604-16842649)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 29122851 - 29122762
Alignment:
Q  152 cactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcataataaaatgatgatgtgacattttaaatgacgttttagaga 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29122851 cactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttcatgataaaatgatgatgtgacattttaaatgacgttttagaga 29122762  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 14553542 - 14553497
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  14553542 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 14553497  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 37429172 - 37429085
Alignment:
Q  53 ctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37429172 ctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataaccaactcacagg 37429085  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 37640304 - 37640225
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg 140  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||| |  |||||| |||| ||| ||| | ||||||||    
T  37640304 ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 37400540 - 37400585
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37400540 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37400585  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37533532 - 37533487
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37533532 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37533487  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37594756 - 37594711
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37594756 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37594711  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37697219 - 37697174
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37697219 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37697174  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37703100 - 37703055
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37703100 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37703055  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37824327 - 37824282
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37824327 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37824282  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37712056 - 37712011
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||    
T  37712056 ttaaatggaacaattccacagtggtgttattctttgccttcattgt 37712011  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 38196108 - 38196154
Alignment:
Q  152 cactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38196108 cactgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttc 38196154  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  24217468 ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt 24217513  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 16842604 - 16842649
Alignment:
Q  61 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 106  Q
    ||||| |||||||||||| | ||||||||||| |||||||||||||    
T  16842604 ttaaatggaacaattccaaattggtgttattctttgccttcgttgt 16842649  T

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