View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_182 (Length: 264)
Name: NF1199_low_182
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_182 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 35936062 - 35936289
Alignment:
| Q |
30 |
actactgaccatgcaagatcagccggctggttttaatttagtttcttcttgaatgcaatggattgtccttgtttccctgtttgtagaatcataacaagtt |
129 |
Q |
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| T |
35936062 |
actactgaccatgcaagatcagccggctggttttaatttagtttcttcttgaatgcaatggattgtctttgtttccctgtttgtagaatcataacaagtt |
35936161 |
T |
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| Q |
130 |
atttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35936162 |
atttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
35936261 |
T |
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| Q |
230 |
tctagtttctgagggaggtaggtagtat |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35936262 |
tctagtttctgagggaggtaggtagtat |
35936289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 35929425 - 35929611
Alignment:
| Q |
46 |
gatcagccggctggttttaatttagtttcttcttgaatgcaatggattgtccttgtttccctgtttgtagaatcataacaagttatttaacaatttagca |
145 |
Q |
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| T |
35929425 |
gatcagccggctgattt-aatatagtttctccttgaatgtaatggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagca |
35929523 |
T |
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| Q |
146 |
ctttgtcattaactttgaaagttaatg----atatactttttcctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
229 |
Q |
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| T |
35929524 |
ctttgtgattaacttttaaacttaatgataaatatattttgtcctctaacttattgttgccgtttatgcacttgtactgtatcttcat |
35929611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 35922783 - 35922909
Alignment:
| Q |
90 |
gattgtccttgtttccctgtttgtagaatcat---aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcct |
186 |
Q |
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|||| ||||||||||||| ||| ||||||||| | |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
35922783 |
gattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatgatatatttgttcct |
35922882 |
T |
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| Q |
187 |
ctaacttattgttgtggttgatgcagt |
213 |
Q |
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| T |
35922883 |
ctaacttattgttgtggtttatgcagt |
35922909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 35941589 - 35941769
Alignment:
| Q |
33 |
actgaccatgca-agatcagccggctggttttaatttagtttcttct---tgaatgcaatggattgtccttgtttccctgtttgtagaatcat--aacaa |
126 |
Q |
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| T |
35941589 |
actgaccatgcatagatcagccggctgattttaaattagtttcttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaa |
35941686 |
T |
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| Q |
127 |
gttatttaacaatttagcactttgtcattaactttgaaagttaatgatatactttttcctctaacttattgttgtggttgatgcagt |
213 |
Q |
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| T |
35941687 |
gttatttaacaatttagcactttgtaattaacttt----gttaattatatattttttcctctaacttatttttatgattgatgcagt |
35941769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 35916507 - 35916641
Alignment:
| Q |
46 |
gatcagccggctggttttaatttagtttcttct---tgaatgcaatg-----gattgtccttgtttccctgtttgtagaatcataacaagttatttaaca |
137 |
Q |
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| T |
35916507 |
gatcagccggctatgtttaatttagtttcttctccttgaatgtaatgtaagggattgtcattgtttccctttttctagaatcatatcaagttatttaacg |
35916606 |
T |
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| Q |
138 |
atttagcactttgtcattaactttgaaagttaatg |
172 |
Q |
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| T |
35916607 |
ttttagcactttgtgattaactttgaaagttaatg |
35916641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 35912131 - 35912247
Alignment:
| Q |
86 |
aatggattgtccttgtttccctgtttgtagaatcat--aacaagttatttaacaatttagcactttgtcattaactttgaaagttaatgatatacttttt |
183 |
Q |
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|||||||||| ||||||||| | ||| ||||||||| | |||||||||||||| ||||| ||| ||| |||||||||||||||||||| || || || |
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| T |
35912131 |
aatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg-gatgtttgtt |
35912229 |
T |
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| Q |
184 |
cctctaacttattgttgt |
201 |
Q |
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|||||||||||||||||| |
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| T |
35912230 |
cctctaacttattgttgt |
35912247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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