View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_185 (Length: 263)
Name: NF1199_low_185
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_185 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 35866808 - 35866967
Alignment:
| Q |
61 |
taattaataattagaacaaattggactcacttagcttgagattttcctttaggaagcactgtaggatctggggcactcttaaccttccatgcttcgttaa |
160 |
Q |
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| T |
35866808 |
taattaataattagaacaaattggactcacttagcttgagattttcctttaggaagcactgtaggatctggggcactcttaaccttccatgcttcgttaa |
35866907 |
T |
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| Q |
161 |
tctcaaccttacaaattcaaatttaaagcaattatatacctatatttgaatttattgaag |
220 |
Q |
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| T |
35866908 |
tctcaaccttacaaattcaaatttaaagcaattatatacctatatttgaatttattgaag |
35866967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 34816764 - 34816876
Alignment:
| Q |
84 |
gactcacttagcttgagattttcctttaggaagcactgtaggatctggggcactcttaaccttccatgcttcgttaatctcaaccttacaaattcaaatt |
183 |
Q |
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| T |
34816764 |
gactcacttagcttgagattttcctttaggaagcaatgtatgatctggaacactcttaaccttccatgcttcgttaatctcaaccttacaaattcaaatt |
34816863 |
T |
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| Q |
184 |
taaagcaattata |
196 |
Q |
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| T |
34816864 |
taaagcaattata |
34816876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35866744 - 35866781
Alignment:
| Q |
1 |
ccatagtttcaaaccattcacaacttcaaaattacctc |
38 |
Q |
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| T |
35866744 |
ccatagtttcaaaccattaacaacttcaaaattacctc |
35866781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 94209 - 94251
Alignment:
| Q |
142 |
accttccatgcttcgttaatctcaaccttacaaattcaaattt |
184 |
Q |
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| T |
94209 |
accttccatgcttcattaatctcaaccttacaaattcaaattt |
94251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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