View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_187 (Length: 261)
Name: NF1199_low_187
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_187 |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25520443 - 25520388
Alignment:
| Q |
1 |
acagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
56 |
Q |
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| T |
25520443 |
acagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
25520388 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 42141666 - 42141783
Alignment:
| Q |
61 |
aatagttgttatgattacatatatgaataaggtatgttggcctcatt--cttgaattttttgtggtatgtaatgtctagacaaaataggaagaaaataat |
158 |
Q |
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| T |
42141666 |
aatagttgttatgattgcacatatgaataaggtaggttggtgtcattttctcaaagtttttgtgttatgta-tgtctagacaaaataggaataaaataat |
42141764 |
T |
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| Q |
159 |
tggagaagagaaaatctat |
177 |
Q |
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| T |
42141765 |
tggagaagagaaaaactat |
42141783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 42133397 - 42133433
Alignment:
| Q |
16 |
gaacagctcaattatttcatcatggtaaatatattga |
52 |
Q |
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| T |
42133397 |
gaacagctcaattatttcatcatggttagtatattga |
42133433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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