View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_188 (Length: 259)
Name: NF1199_low_188
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_188 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 41486448 - 41486219
Alignment:
| Q |
30 |
agagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataa |
129 |
Q |
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| T |
41486448 |
agagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataa |
41486349 |
T |
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| Q |
130 |
gcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaagacgtcagctgaatgatggaaccttccatgttattgatttat |
229 |
Q |
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| T |
41486348 |
gcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaagacgccagctgaatgatggaatcttccatgttattgatttat |
41486249 |
T |
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| Q |
230 |
tcttttaactgaaacaagaaaagggaaact |
259 |
Q |
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| T |
41486248 |
tcttttaactgaaacaagaaaagggaaact |
41486219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 41483305 - 41483187
Alignment:
| Q |
31 |
gagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataag |
130 |
Q |
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| T |
41483305 |
gagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaacatgcctgatgacttgtgcattcgcatttgatcagttataacttataag |
41483206 |
T |
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| Q |
131 |
caaatgtgcaataggagaa |
149 |
Q |
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| T |
41483205 |
caaacatgcaataggagaa |
41483187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 41483171 - 41483112
Alignment:
| Q |
200 |
atgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaact |
259 |
Q |
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| T |
41483171 |
atgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaact |
41483112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 45384520 - 45384598
Alignment:
| Q |
107 |
gtttgatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaa |
187 |
Q |
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| T |
45384520 |
gtttgatcagttataactaataaccaaa-gtacaataggataaccttt-ggtgactaatatgagaaagaaggaaaacagaa |
45384598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 5795720 - 5795833
Alignment:
| Q |
76 |
tgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaaga |
175 |
Q |
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| T |
5795720 |
tgtgaacatatcggatgacttgttcattgttggttgatcaattataccttataagcaaacatacaataatataaccttt-ggtgactaatataagaaaga |
5795818 |
T |
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| Q |
176 |
aggaaaacagaagac |
190 |
Q |
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| T |
5795819 |
aggaaaacagaagac |
5795833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 5664411 - 5664449
Alignment:
| Q |
95 |
ttgtgcgttctcgtttgatcagttataacttataagcaa |
133 |
Q |
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| T |
5664411 |
ttgtgcattcttgtttgatcagttataacttataagcaa |
5664449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 5685435 - 5685473
Alignment:
| Q |
95 |
ttgtgcgttctcgtttgatcagttataacttataagcaa |
133 |
Q |
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| T |
5685435 |
ttgtgcattcttgtttgatcagttataacttataagcaa |
5685473 |
T |
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