View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_189 (Length: 257)
Name: NF1199_low_189
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_189 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2242901 - 2243138
Alignment:
| Q |
1 |
ttggaatttggtgaaggggattggcaaaggatgaaatttttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaattgcaatcat |
100 |
Q |
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| T |
2242901 |
ttggaatttggtgaaggggattggcaagggatgaaatttttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaattgcaatcat |
2243000 |
T |
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| Q |
101 |
gttacttttctctggataagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctatctatgtac |
200 |
Q |
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| T |
2243001 |
gttacttttctctagataagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctatctatgtac |
2243100 |
T |
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| Q |
201 |
ttcataaattcctttaacctttttctgtttttccttat |
238 |
Q |
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| T |
2243101 |
ttcataaattcctttaacctttttctgtttttccttat |
2243138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 31780117 - 31780345
Alignment:
| Q |
19 |
gattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatga------cagtgaagaaattgcaatcatgttacttttct |
111 |
Q |
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| T |
31780117 |
gattggcaagggatgaaatttttggtgtttggtttgtatgtgaagactgtgattccaaattaatgacacagtgaagaaattgtagacatgttacttt-ct |
31780215 |
T |
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| Q |
112 |
ctggataagttgaaataa----cttagcaatccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctatctatgtacttcataa |
207 |
Q |
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|| | ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31780216 |
ctaggtaagtggaaataaataacttggcaatccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctatgtatgtacttcataa |
31780315 |
T |
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| Q |
208 |
attcctttaacctttttctgtttttccttat |
238 |
Q |
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| T |
31780316 |
attcctttaaccttttt-tgtttttccttat |
31780345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 29057137 - 29057292
Alignment:
| Q |
18 |
ggattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatgacagtgaagaaattgcaatcatgttacttttctctgga |
116 |
Q |
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|||||||||| ||||||||||||||||||||| ||| |||| |||| ||||||| || | || | ||| ||||||||| |||||||||||||| | | |
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| T |
29057137 |
ggattggcaagggatgaaatttttggtgtttgatttctatgtgaagactgtgattgcagaagagactgatgaaattgcagacatgttacttttctgtagc |
29057236 |
T |
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| Q |
117 |
taagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaa |
172 |
Q |
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| T |
29057237 |
taagttgaaataatttagcaatcgttagactttgaaggatgaaaattcagagaaaa |
29057292 |
T |
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