View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_19 (Length: 596)
Name: NF1199_low_19
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 98 - 596
Target Start/End: Original strand, 36230427 - 36230932
Alignment:
| Q |
98 |
tgaaacacataggagaatcaacattactttcttccttaattataccacttgaattactttctgaacctcctctttctatacctcttgaaattggacattc |
197 |
Q |
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| T |
36230427 |
tgaaacacataggagaatcaacattactttcttccttaattataccacttgaattactttctgaacctcctctttctatacctcttgaaattggacattc |
36230526 |
T |
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| Q |
198 |
tacttctttctctaactcattgctttcaactcttaacaatttcgctttcaactctcttaactgcagttcacacacataaaa---------gattacacat |
288 |
Q |
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| T |
36230527 |
tacttctttctctaactcattgctttcaactcgtaacaatttcgctttcaactctcttaactgcagttcacacacataaaaagacacaaagattacacat |
36230626 |
T |
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| Q |
289 |
aacatcattcacataaacnnnnnnnnnntatatcatgaataatacatgtatatattacctttctagtaagagtctcattctcttgttgaagattagtata |
388 |
Q |
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| T |
36230627 |
aacatcattcacataaacaaaaaaaaa--atatcatgaataatacatgtatatattacctttctagttagagtctcattctcttgttgaagattagtata |
36230724 |
T |
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| Q |
389 |
ctcaaccttaagaacatcaaaattggacttaagaacactataatctctttccaattgtttggttttcgttcgtgctcgacgattttggaaccaaattgaa |
488 |
Q |
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| T |
36230725 |
ctcaaccttaagaacatcaaaattggacttaagaacactataatctctttccaattgtttggttttcgttcgtgctcgacgattttggaaccaaattgaa |
36230824 |
T |
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| Q |
489 |
acttgtctaggttgcaagcctaaatcttcagctaacttcacttttctctctggctctagcttgttgtccaattcaaaactcttttctaaagcttttactt |
588 |
Q |
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| T |
36230825 |
acttgtctaggttgcaagcctaaatcttcagctaacttcacttttctctctggctctagcttgttgtccaattcaaaactcttttctaaagcttttactt |
36230924 |
T |
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| Q |
589 |
gatcataa |
596 |
Q |
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| T |
36230925 |
gatcataa |
36230932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 592
Target Start/End: Complemental strand, 37519910 - 37519721
Alignment:
| Q |
403 |
catcaaaattggacttaagaacactataatctctttccaattgtttggttttcgttcgtgctcgacgattttggaaccaaattgaaacttgtctaggttg |
502 |
Q |
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| T |
37519910 |
catcataattggctttgagaacaccataatctctttccaattgtttggtcttccatctagcacgacggttttgaaaccaaacagcaacttgtcttggttg |
37519811 |
T |
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| Q |
503 |
caagcctaaatcttcagctaacttcacttttctctctggctctagcttgttgtccaattcaaaactcttttctaaagcttttacttgatc |
592 |
Q |
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| T |
37519810 |
caaaccaagctcttgagcaagcttaactttcctatctggttcaagcttgttttcaacttcaaaattcttctccaaagccttaacttgatc |
37519721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 23262553 - 23262507
Alignment:
| Q |
380 |
attagtatactcaaccttaagaacatcaaaattggacttaagaacac |
426 |
Q |
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| T |
23262553 |
attattatactcaaacttaagaacatcgaaattggactttagaacac |
23262507 |
T |
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