View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_191 (Length: 254)
Name: NF1199_low_191
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_191 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 35936538 - 35936288
Alignment:
| Q |
13 |
aatatgaaattcagctatgaaataagtataacttaactctgaattgtttcatccttgaatcaaattcaaattttttcgaactattcgtcatttggtggaa |
112 |
Q |
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| T |
35936538 |
aatatgaaattcggctatgaaataagtataacttgacttagaattgttccatccttgaatcaaatttagattttttcgaacgattcgtcatttggtggaa |
35936439 |
T |
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| Q |
113 |
ctcattaaccacttaaattcaataacttggttaa-------cactatacaactttcttttaatgttttcttaatgtgcaattcctttaacaaaaattatt |
205 |
Q |
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| T |
35936438 |
ctcattaaccacttaagctcaataacttggttaacacttaacactatacaactttcttttaatgctttcttaatgtgcaattcctttaacaaaaattatt |
35936339 |
T |
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| Q |
206 |
acatattaaattacatatgacacac--aaataatattttgacataaagaat |
254 |
Q |
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| T |
35936338 |
acatattaaattacatatgacacacataaataagattttaacataaagaat |
35936288 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 21629854 - 21629801
Alignment:
| Q |
96 |
ttcgtcatttggtggaactcattaaccacttaaattcaataacttggttaacac |
149 |
Q |
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| T |
21629854 |
ttcgtcctttggtggaactcattaaccacttgaacttaatcacttggttaacac |
21629801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 17008229 - 17008171
Alignment:
| Q |
69 |
gaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccacttaa |
128 |
Q |
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| T |
17008229 |
gaatcaaattcaaatttttctgaacaattcgt-atttggtagaactcattaaccatttaa |
17008171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 18096147 - 18096091
Alignment:
| Q |
70 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
126 |
Q |
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| T |
18096147 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
18096091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 21829280 - 21829224
Alignment:
| Q |
70 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
126 |
Q |
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| T |
21829280 |
aatcaaattcaaattttttcgaacgattcgtcgtttgatgaaggtcattaaccactt |
21829224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 33717101 - 33717032
Alignment:
| Q |
54 |
aattgtttcatccttgaatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaacca |
123 |
Q |
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| T |
33717101 |
aattgtttcatccaaaaatcaaacttaaattatctcgaattattagtcatttggtggagctcattaacca |
33717032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 37853753 - 37853697
Alignment:
| Q |
70 |
aatcaaattcaaattttttcgaactattcgtcatttggtggaactcattaaccactt |
126 |
Q |
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| T |
37853753 |
aatcaaattcaaattcttttgaacaatttgtcatttagtggaattcattaaccactt |
37853697 |
T |
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