View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_194 (Length: 252)
Name: NF1199_low_194
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_194 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 41697298 - 41697074
Alignment:
| Q |
17 |
tgacttggtcgttaaggatttgatgttattcagatagaatttagttgcataacttttcaaaataaaggggtttaatcggannnnnnnnn--gcaaacaca |
114 |
Q |
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| T |
41697298 |
tgacttggttgttaaggatttgatgttattcggatagaatttagttgcataacttttcaaaataaaggggtttaatcggatttttttttttgcaaacaca |
41697199 |
T |
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| Q |
115 |
cctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatctatttaagattttaatttaccattgtaattcttaattagacttaagtttt |
214 |
Q |
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| T |
41697198 |
cctaacaaagtattctctggtgaagtaaataagatagtaacaatacaatctatttaagattt-aatttaccattgtaattcttaattagacttaagtttt |
41697100 |
T |
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| Q |
215 |
atatgtttttgtttttgataggttca |
240 |
Q |
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| T |
41697099 |
atatgtttttgtttttgataggttca |
41697074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 41693365 - 41693235
Alignment:
| Q |
110 |
acacacctaacaaagtactctctggtgaagtaaataagatagtaacaataaaatctatttaagattttaatttaccattgtaattcttaattagacttaa |
209 |
Q |
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|||||||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||| |||||||| ||| | |
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| T |
41693365 |
acacacctaacaaagtactctctgatggagtaaataagagagtaataatacaatctatttaagattttcatttaccattgcaatttttaattaggcttta |
41693266 |
T |
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| Q |
210 |
gttttatatgtttttgtttttgataggttca |
240 |
Q |
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| T |
41693265 |
attttatatatttttgttttggacaggttca |
41693235 |
T |
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