View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_197 (Length: 251)
Name: NF1199_low_197
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_197 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5137757 - 5137537
Alignment:
| Q |
19 |
ggcattactaaatgttatttgttttgcttaattgttcctctaacaatgaaagaataactaaaacaaaatttactgttttcnnnnnnnncttgtcagcttt |
118 |
Q |
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| T |
5137757 |
ggcattactaaatgttatttgttttccttaattgttcctctaacaatgaaagaataactaaaataaaatttactgttttcataaaaaacttgtcagcttt |
5137658 |
T |
|
| Q |
119 |
ccttaaattaaaatagcttcttagtacactagtatggatggcaacatgttggtcctcatctgttatttgaattaatagctagcctaccatgattgaacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5137657 |
ccttaaattaaaatagcttcttagtacactagtatggatggcaacatgttggtcctcatctgttctttgaattaatagctagcctaccatgattgaacat |
5137558 |
T |
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| Q |
219 |
cgacattgctttctctagtat |
239 |
Q |
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||||||||||||||||||||| |
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| T |
5137557 |
cgacattgctttctctagtat |
5137537 |
T |
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