View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_199 (Length: 251)
Name: NF1199_low_199
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_199 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 20368465 - 20368667
Alignment:
| Q |
9 |
gaagaatatcaggatgatctatcgacggaaaatcaaagacactgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaaca |
108 |
Q |
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| T |
20368465 |
gaagaaaatcaggatgatctatcgatggaaaatcaaagacactggttaaatttgatgggaccatatctggcttgaaggagccgatgcggctaggtgaaca |
20368564 |
T |
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| Q |
109 |
ctttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactcccaaacattg-gaaaggataatgagaacaatagaaaccttgtgaaggtttat |
207 |
Q |
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| T |
20368565 |
ctttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactctcaaacattgagaaaggataatgagaacaataaaaaccttgtgaaggtttat |
20368664 |
T |
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| Q |
208 |
gag |
210 |
Q |
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||| |
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| T |
20368665 |
gag |
20368667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 20368771 - 20368711
Alignment:
| Q |
141 |
gagctcgtgtgcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaa |
200 |
Q |
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| T |
20368771 |
gagcttgtgtccagtcccaaacattaggaaaggatgatgaaaacaatacaaaccttgtgaa |
20368711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 46951420 - 46951260
Alignment:
| Q |
51 |
tgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgt |
150 |
Q |
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| T |
46951420 |
tgattaaatttgctggtgacaaatcaggcttggaggaggccatgcggcttggtgaacactttaagaaggaaaatcacggccgcaaggactgggttcgcgt |
46951321 |
T |
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| Q |
151 |
gcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaaggtttatgag |
210 |
Q |
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| T |
46951320 |
gcaggcccaaacattaggaaaggacaatgagaataacccaaaccttgtgaagtttgatgag |
46951260 |
T |
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