View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_201 (Length: 251)
Name: NF1199_low_201
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_201 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 18544223 - 18544068
Alignment:
| Q |
22 |
agttaagtcccttaacggtggaccaccatgaataaaattaagagccattagattaattgagttcatatatcttattatgcactgaatcacacttatcttt |
121 |
Q |
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| T |
18544223 |
agttaagtccctcaccggtggaccaccatgaataaaattaagagctattagattaattgagttcatatatcttattatacacttaatcacacttatcttt |
18544124 |
T |
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| Q |
122 |
ttcctctc--tctcccctcttccttccctttatctgtttcttcaatcgttaaattc |
175 |
Q |
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| T |
18544123 |
ttcctctctctctcccctcttccttccctttatctgtttcttcaatctttaaattc |
18544068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 18543802 - 18543739
Alignment:
| Q |
171 |
aattcgtaatctcaactaacggaatggtgataagggtaacgatcataaatcaattaattttatt |
234 |
Q |
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| T |
18543802 |
aattcgtaatctcaactaacggaatggtgataagggtaacgatcacaaatcaattaattttatt |
18543739 |
T |
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 39937931 - 39937854
Alignment:
| Q |
22 |
agttaagtcccttaacggtggaccaccatgaataaaattaagagccattagattaattgagttcatatatcttattat |
99 |
Q |
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| T |
39937931 |
agttaagtccctcaccggtggaccaccatgaataacaataagagccattagattaactaaattcatatatcttattat |
39937854 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 2261547 - 2261491
Alignment:
| Q |
43 |
accaccatgaataaaattaagagccattagattaattgagttcatatatcttattat |
99 |
Q |
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| T |
2261547 |
accaccatgaataacaataagagccattagattaattgagttcatatatcttattat |
2261491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 27746181 - 27746106
Alignment:
| Q |
24 |
ttaagtcccttaacggtggaccaccatgaataaaattaagagccattagattaattgagttcatatatcttattat |
99 |
Q |
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| T |
27746181 |
ttaagtccctcaccagtggatcaccgtgaataacaataagagccattagattaattgagttcatatatcttattat |
27746106 |
T |
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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 32772960 - 32772907
Alignment:
| Q |
37 |
cggtggaccaccatgaataaaattaagagccattagattaattgagttcatata |
90 |
Q |
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| T |
32772960 |
cggtggaccaccataaataacaataagagccattagattaattgagttcatata |
32772907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 32772850 - 32772803
Alignment:
| Q |
105 |
gaatcacacttatctttttcctctctctcccctcttccttccctttatc |
153 |
Q |
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| T |
32772850 |
gaatcacatttatctttttcctctctc-cccctctttctcccctttatc |
32772803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 14527599 - 14527523
Alignment:
| Q |
24 |
ttaagtcccttaacggtggaccaccatgaataa-aattaagagccattagattaattgagttcatatatcttattat |
99 |
Q |
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| T |
14527599 |
ttaagtccctcaccggtgaaccactatgaataataattaagagtcattagattaatcaagtacatatatcttattat |
14527523 |
T |
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