View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_204 (Length: 251)
Name: NF1199_low_204
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_204 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 33397478 - 33397699
Alignment:
| Q |
30 |
gcagaatcagttgaccaagggaaaaacatgtcagcaactaaacaatctggtttttcttgttccaaaacatgttcaagtggttcccttagaagaagggttg |
129 |
Q |
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| T |
33397478 |
gcagaatcagttgaccaagggaaaaacatgtcagcaactaaacaatctggtttttcttgttccaaaacatgttcaagtggttcccttagaagaagggttg |
33397577 |
T |
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| Q |
130 |
atttcatgaacttgatgaacttgtctggtgctaatgctgattcagaattttcgcaaccttcaggtaaaccggtttcttctggtgaagggaatttgatagt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33397578 |
atttcatgaacttgatgaacttgtctggtgctaatgctgattcagaattttcgcaaccttccggtaaaccggtttcttctggtgaagggaatttgatagt |
33397677 |
T |
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| Q |
230 |
tttgatgttgattttagctttt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
33397678 |
tttgatgttgattttagctttt |
33397699 |
T |
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