View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_207 (Length: 250)
Name: NF1199_low_207
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_207 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37107993 - 37107752
Alignment:
| Q |
1 |
atgtttaatgcttggtattttagatttaagnnnnnnntcaaaatctgtattgtaacctagaccatgtgatctcaatccaacgaccatcaatgtgttgact |
100 |
Q |
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| T |
37107993 |
atgtttaatgcttggtattttagatttaagaaaaaaatcaaaatctgtattgtaacctagaccatgtgatctcaatccaacgaccatcaatgtgttgact |
37107894 |
T |
|
| Q |
101 |
atgtgaatgtgtgtgattctttgtgcatgagccaatgatccacattacataatgcaaatattagtgttataagctctaaatttgaagttaaagggaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37107893 |
atgtgaatgtgtgtgattctttgtgcatgagccaatgatccacattacataatgcaaatattagtgttataagctctaaatttgaagttaaagggaaaag |
37107794 |
T |
|
| Q |
201 |
ttttagcaaagaacttgtggtaacaacaatgcaaattcatct |
242 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37107793 |
ttttagccaagaacttgtggtaacaacaatgcaaattcatct |
37107752 |
T |
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