View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_208 (Length: 250)
Name: NF1199_low_208
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_208 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6822050 - 6822271
Alignment:
| Q |
1 |
cacccgatacctgaattgaagctttcacaatagacatcgaactcaaggacagcaacaaatctaaacagtttaacaattgtgtcttcttttctccagccta |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6822050 |
caccccatacctgaattgaagctttcacaatagacatcgaactcaaggacagcaacaaatctaaacagtttaacaattgtgtcttcttttctccagccta |
6822149 |
T |
|
| Q |
101 |
gcgacttgtgaaagaaagtagcttaattgatccttttcctcaaagctagcatcctatctctatgaggtcttctctctttgcaatacgatgatgttttacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6822150 |
gcgacttgtgaaagaaagtagcttaattgatccttttcctcaaagctagcatcctatctctatgaggtcttctctctttgcaatacgatgatgttttacc |
6822249 |
T |
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| Q |
201 |
aaagacctttctccctctctct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6822250 |
aaagacctttctccctctctct |
6822271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7849055 - 7849273
Alignment:
| Q |
1 |
cacccgatacctgaattgaagctttcacaatagacatcgaactcaaggacagcaacaaatctaaacagtttaacaattgtgtcttcttttctccagccta |
100 |
Q |
| |
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||||| |||||||||||||||| |||||| |||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7849055 |
caccccatacctgaattgaagccttcacagtagacatccaactcaagggcagcgataaatctaaacagtttaacaattgtgtcttcttttctccagccta |
7849154 |
T |
|
| Q |
101 |
gcgacttgtgaaagaaagtagcttaattgatccttttcctcaaagctagcatcctatctctatgaggtcttctctctttgcaatacgatgatgttttacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7849155 |
gcgacttgtgaaagaaagtagcttaattgatccttttcctcaaagctag-atcctatctctatgaggtcttctctctttgcaatacgatgatgttttacc |
7849253 |
T |
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| Q |
201 |
aaagacctttctccctctct |
220 |
Q |
| |
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|||||||| |||| |||||| |
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| T |
7849254 |
aaagacctctctcactctct |
7849273 |
T |
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