View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_209 (Length: 249)

Name: NF1199_low_209
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_209
NF1199_low_209
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-249)||(35700-35937)
scaffold0003 (12-200)||(42371-42559)
[»] chr3 (3 HSPs)
chr3 (12-200)||(31688537-31688725)
chr3 (12-200)||(31911851-31912039)
chr3 (12-200)||(31945499-31945687)
[»] chr6 (1 HSPs)
chr6 (12-200)||(27444802-27444987)
[»] chr2 (3 HSPs)
chr2 (175-249)||(32280011-32280085)
chr2 (151-228)||(7828585-7828661)
chr2 (52-116)||(7828487-7828551)
[»] chr7 (2 HSPs)
chr7 (151-212)||(18940204-18940264)
chr7 (52-105)||(18940106-18940159)
[»] chr8 (1 HSPs)
chr8 (23-67)||(43226999-43227043)


Alignment Details
Target: scaffold0003 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 35700 - 35937
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  35700 acatcatgaagaaacatgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaaattcttcaactattttgaacta 35799  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaattgctatattttg 211  Q
    |||||                     |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  35800 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactatagtaccttgaaaacccaattgctatattttg 35899  T
Q  212 actcttcaacaaatagtagcatttcttgtcaaagaaaa 249  Q
    | |||||| ||||||||||||||||||| |||||||||    
T  35900 attcttcaccaaatagtagcatttcttgccaaagaaaa 35937  T

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Target: scaffold0003; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 42371 - 42559
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  42371 acatcatgaaaaaacatgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaacta 42470  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaatt 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  42471 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactacagtaccttgaaaactcaatt 42559  T

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Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 31688725 - 31688537
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  31688725 acatcatgaacaaacatgcaaaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaacta 31688626  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaatt 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31688625 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactacagtaccttgaaaacccaatt 31688537  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 31911851 - 31912039
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  31911851 acatcatgaacaaacatgcaaaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaacta 31911950  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaatt 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31911951 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactacagtaccttgaaaactcaatt 31912039  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 31945499 - 31945687
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  31945499 acatcatgaacaaacatgcaaaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaacta 31945598  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaatt 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31945599 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactacagtaccttgaaaactcaatt 31945687  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 27444987 - 27444802
Alignment:
Q  12 acatcatcaacaaacacgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaacta 111  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||     
T  27444987 acatcatgaacaaacatgcaaaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaactg 27444888  T
Q  112 aagctnnnnnnnnnnnnnnnnnnnnnttaacaaatgatgaatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaatt 200  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||    
T  27444887 aagctaaaaaaaattaaaaacaaaaattaacaaatgatgaatcgagcaaattgattggttcaaaactac---accttgaaaacccaatt 27444802  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 32280085 - 32280011
Alignment:
Q  175 aactccagtaccttgaaaacccaattgctatattttgactcttcaacaaatagtagcatttcttgtcaaagaaaa 249  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  32280085 aactccactaccttgaaaacccaattgctatattttgattcttcaccaagtagtagcatttcttgccaaagaaaa 32280011  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 7828585 - 7828661
Alignment:
Q  151 aatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaattgctatattttgactcttcaacaaatagt 228  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||| || ||||||||    
T  7828585 aatcgagcaaattgattggttcaaaactgcagta-cttgaaaacccaattgctctattttgattctacaccaaatagt 7828661  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 7828487 - 7828551
Alignment:
Q  52 tagaaattatataaaacaaaaactcataagcccgttaagttcttcaactattttgaactaaagct 116  Q
    |||||||||||||||||| ||||||| |  |||||| ||||||||||||||||| ||| ||||||    
T  7828487 tagaaattatataaaacagaaactcacagccccgtttagttcttcaactatttttaaccaaagct 7828551  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 18940204 - 18940264
Alignment:
Q  151 aatcgagcaaattgattggttcaaaactccagtaccttgaaaacccaattgctatattttga 212  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||    
T  18940204 aatcgagcaaattgattggttcaaaactacagca-cttgaaaacccaattgctctattttga 18940264  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 18940106 - 18940159
Alignment:
Q  52 tagaaattatataaaacaaaaactcataagcccgttaagttcttcaactatttt 105  Q
    |||||||||||||||||| ||||||| || || ||| | |||||||||||||||    
T  18940106 tagaaattatataaaacagaaactcacaaccctgtttaattcttcaactatttt 18940159  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 43227043 - 43226999
Alignment:
Q  23 aaacacgcaaaaaagacataatcgcatattagaaattatataaaa 67  Q
    |||||| |||| ||||||| ||| |||||||||||||||||||||    
T  43227043 aaacacacaaagaagacatcatctcatattagaaattatataaaa 43226999  T

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