View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_212 (Length: 247)
Name: NF1199_low_212
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_212 |
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| [»] chr2 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 11472635 - 11472414
Alignment:
| Q |
26 |
acccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||| |
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| T |
11472635 |
acccttttggaatttcttcaggattaccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttcagacccaagaccatagttttg |
11472536 |
T |
|
| Q |
126 |
ttcaataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaaca |
225 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11472535 |
ttcaataacattctcttcacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcacatttttaggttggtggtatcttgtaaca |
11472436 |
T |
|
| Q |
226 |
gtccaatggtgtagataagttt |
247 |
Q |
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|||||||||||||||||||||| |
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| T |
11472435 |
gtccaatggtgtagataagttt |
11472414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 11485298 - 11485077
Alignment:
| Q |
26 |
acccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
11485298 |
acccttttggaatttcttcaggattaccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttcagatccaagaccatagtattg |
11485199 |
T |
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| Q |
126 |
ttcaataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaaca |
225 |
Q |
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| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| | |||||||||||||||| |||||| |||| |
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| T |
11485198 |
tccaaaaacattctcttgacaaaatccattgtttcttttaaaaataataccttcttcactattgtttgccacatttttaggttggtgatatcttacaaca |
11485099 |
T |
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| Q |
226 |
gtccaatggtgtagataagttt |
247 |
Q |
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||||||| ||||||||||||| |
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| T |
11485098 |
atccaatgatgtagataagttt |
11485077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 11479027 - 11478806
Alignment:
| Q |
26 |
acccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttg |
125 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |||||||| | |||||||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
11479027 |
acccttttggaatttcttcatgattaccaacttctattccataaggttgaggaatatatgtatttgtgcctcttgtttcagatccaagaccatagtattg |
11478928 |
T |
|
| Q |
126 |
ttcaataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaaca |
225 |
Q |
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| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||| |||||||||||||||||||||| |||| |
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| T |
11478927 |
tccaaaaacattctcttgacaaaatccatgatttcttttaaaaataaaaccttgttggctattgtttgtcacatttttaggttggtggtatctcacaaca |
11478828 |
T |
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| Q |
226 |
gtccaatggtgtagataagttt |
247 |
Q |
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|||||||||||||||||||| |
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| T |
11478827 |
acccaatggtgtagataagttt |
11478806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 11462451 - 11462230
Alignment:
| Q |
26 |
acccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttg |
125 |
Q |
| |
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||||||| ||||||| | ||||||||||| ||||| |||||||||| |||||||||| || ||||||||| ||||||| || || ||||||| ||| |
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| T |
11462451 |
accctttaggaatttgtgaaggattaccaatttctactccataagggtcaggaatatatgtatctgtgcctctagtttcagcccctaggccatagtattg |
11462352 |
T |
|
| Q |
126 |
ttcaataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaaca |
225 |
Q |
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| ||| || || ||||| || ||||||| |||||| | ||||||| || || ||||||||||| ||||||||||||| |||||| || |||| |
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| T |
11462351 |
tccaagaatatcatcttggcataatccattatttctcaccataataatatctgtttggttattgtttgtcacatttttaggttgttggtattttagaaca |
11462252 |
T |
|
| Q |
226 |
gtccaatggtgtagataagttt |
247 |
Q |
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|||||||||| |||||||||| |
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| T |
11462251 |
atccaatggtgaagataagttt |
11462230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 21546732 - 21546511
Alignment:
| Q |
26 |
acccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttg |
125 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||||||| |||||||||||||||| ||| |
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| T |
21546732 |
acccttttggaatttcagcaggattaccaacttctataccataagggtctggaatatatgtatttgtgcttcttgtttctgatccaagaccatagtattg |
21546633 |
T |
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| Q |
126 |
ttcaataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaaca |
225 |
Q |
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| | | || || |||||| ||||| |||| |||||||| |||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
21546632 |
tcctaaaatatcctcttggcaaaagccattatttctttggaaaataatacctgattggctatttggtgtcacatttttaggttggtggtatcttataaca |
21546533 |
T |
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| Q |
226 |
gtccaatggtgtagataagttt |
247 |
Q |
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||||||||||||||||||||| |
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| T |
21546532 |
atccaatggtgtagataagttt |
21546511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 47399 - 47180
Alignment:
| Q |
28 |
ccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttcagatccaagaccatagttttgtt |
127 |
Q |
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|||||||||||||| | ||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
47399 |
ccttttggaatttcagctggattaccaacttctataccataagggtctggaatatatgtatttgtgcctcttgtttcagatccaagaccatagtactgtc |
47300 |
T |
|
| Q |
128 |
caataacattctcttgacaaaatccatgatttctttttaaaataataccttctttactattgtttgtcgcatttttaggttggtggtatcttgtaacagt |
227 |
Q |
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| | || | ||| ||| ||||| |||| ||||||| | |||||||||| || ||||| | |||| ||||||||||||| |||||||| ||||| |
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| T |
47299 |
ctaaaatagtctgttggcaaaagccatcatttcttacaataataatacctgattgcctattttgtgtcacatttttaggttgttggtatctaacaacagc |
47200 |
T |
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| Q |
228 |
ccaatggtgtagataagttt |
247 |
Q |
| |
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||| |||||||||||||||| |
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| T |
47199 |
ccagtggtgtagataagttt |
47180 |
T |
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