View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1199_low_214 (Length: 244)
Name: NF1199_low_214
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_214 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 5871384 - 5871513
Alignment:
| Q |
33 |
accacagaacagcagaaagaaaagatgatagaggcatctattgcctctttgaaggtgggactcctgattcaaaacttgattggggcccatctttcatttg |
132 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5871384 |
accatagaacagcagaaagaaaagatgatagaggcatctattgcctctttgaaggtgggactcctgattcaaaacttgattggggcccatctttcatttg |
5871483 |
T |
|
| Q |
133 |
caaagatgacactgcttattcagatggcac |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5871484 |
caaagatgacactgcttattcagatggcac |
5871513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 53491223 - 53491258
Alignment:
| Q |
204 |
aacctgtgaaaaattgaagtgatttatttggtatct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491223 |
aacctgtgaaaaattgaagtgatttatttggtatct |
53491258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University