View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_215 (Length: 243)
Name: NF1199_low_215
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_215 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 11142948 - 11142816
Alignment:
| Q |
31 |
cttcagtgtaacaatttgattatatgaatttaagatactaagatcttgtaattttatattgcgtgaaaattataatctttgcccgattatttttaataac |
130 |
Q |
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| T |
11142948 |
cttcaatgtaataatttgtttatatgaatttaagatactaagatcttgtaattttatattgtgtgaaaattataatctttgcctgattatttttaataac |
11142849 |
T |
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| Q |
131 |
tcattatagcatatttattcattgtcagtggaa |
163 |
Q |
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| T |
11142848 |
tcattatagcatatttattcattgtcagtggaa |
11142816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 11127708 - 11127602
Alignment:
| Q |
51 |
tatatgaatttaagatactaagatcttgtaattttatattgcgtgaaaattataatctttgcccgattatttt-taataactcattatagcatatttatt |
149 |
Q |
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| T |
11127708 |
tatatgtatataagatactaagatcttgtaattttatattgtgttaaaattataatctt-gcgcagttattttattacaactcattgtagcatatttatt |
11127610 |
T |
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| Q |
150 |
cattgtca |
157 |
Q |
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| T |
11127609 |
cattgtca |
11127602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 11140244 - 11140186
Alignment:
| Q |
43 |
aatttgattatatgaatttaagatactaagatcttgtaattttatattgcgtgaaaatt |
101 |
Q |
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| T |
11140244 |
aatttgtttatatgaatttaagatactaagatcttgtaattttatactgtgtgaaaatt |
11140186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 11123483 - 11123378
Alignment:
| Q |
51 |
tatatgaatttaagatactaagatcttgtaattttatattgcgtgaaaattataatctttgcccgattatttt-taataactcattatagcatatttatt |
149 |
Q |
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| T |
11123483 |
tatatgtatataagatactaagatcttgtaattttata-tgtgttaaaattataa-ccttgcgcagttattttattacaactcattgtagcaaatttatt |
11123386 |
T |
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| Q |
150 |
cattgtca |
157 |
Q |
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| T |
11123385 |
cattgtca |
11123378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 11140559 - 11140507
Alignment:
| Q |
50 |
ttatatgaatttaagatactaagatcttgtaattttatattgcgtgaaaatta |
102 |
Q |
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| T |
11140559 |
ttatatgaatttaaagtaccaagatcttgtaattttatactgtgtgaaaatta |
11140507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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