View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_216 (Length: 242)
Name: NF1199_low_216
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_216 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 18219273 - 18219075
Alignment:
| Q |
26 |
gaagagaaaggtaataatgtcnnnnnnncaaaatcagaagacacacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggc |
125 |
Q |
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| T |
18219273 |
gaagagaaaggtaataatgtcaaaaaaacaaaatcagcagacacacaaatggtagtaggaagcagagcagcagaggacaaagcagcaaagatagaaaggc |
18219174 |
T |
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| Q |
126 |
tgaaaagtggtttccaaatttgcaaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactg |
224 |
Q |
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| T |
18219173 |
tgaaaagtggtttccaaatttgcaaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactg |
18219075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 43011093 - 43011017
Alignment:
| Q |
148 |
caaaccaagagggacctttatgtggccaaacatgagcttgtctccacatgttgtaaccaaccttgatgaacatactg |
224 |
Q |
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|||| |||||||||||||||||||| |||| | ||| |||| |||||||||||||||||||||||||||||| |||| |
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| T |
43011093 |
caaaacaagagggacctttatgtggtcaaatacgagtttgtatccacatgttgtaaccaaccttgatgaacacactg |
43011017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 43011184 - 43011096
Alignment:
| Q |
4 |
cattggacaagagacaagggaggaagagaaaggtaataatgtcnnnnnnncaaaatcagaagacacacaaatggtagtaggaagcagag |
92 |
Q |
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||||||||| ||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||| |
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| T |
43011184 |
cattggacatgagacaagggaggaagagaaaggtactaacgtgaacaaaacaaaatcagcagacacacaaatggtagtaggaagcagag |
43011096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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