View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_217 (Length: 242)
Name: NF1199_low_217
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_217 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 3373482 - 3373703
Alignment:
| Q |
21 |
tagacaattgacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattct |
120 |
Q |
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| T |
3373482 |
tagacaattgacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattct |
3373581 |
T |
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| Q |
121 |
ccactgaacattaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgattta |
220 |
Q |
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| T |
3373582 |
ccactgaacattaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgattta |
3373681 |
T |
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| Q |
221 |
gaaacaaacaaaaccgtactgc |
242 |
Q |
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| T |
3373682 |
gaaaccaacaaaatcgtactgc |
3373703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 3347229 - 3347429
Alignment:
| Q |
42 |
taagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgag |
141 |
Q |
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|||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3347229 |
taagcatccttttcttgttgaaacgatcttctcaagtagcttcctagaaaaagttctagcttcctcaagttcatattctccactgaacattaggtttgag |
3347328 |
T |
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| Q |
142 |
gctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaacaaacaaaaccgtactg |
241 |
Q |
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||||| || || |||||||| ||||||| ||| |||| |||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
3347329 |
gctctaaacacgtgaagcattgcacttgtgaattgcttataatctttctcaatttcagctcgaatttcatcatcatttagaaaccaacaaaaccgtactg |
3347428 |
T |
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| Q |
242 |
c |
242 |
Q |
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| T |
3347429 |
c |
3347429 |
T |
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