View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_218 (Length: 241)

Name: NF1199_low_218
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_218
NF1199_low_218
[»] chr7 (1 HSPs)
chr7 (29-217)||(37649159-37649347)
[»] chr4 (2 HSPs)
chr4 (165-217)||(25936679-25936731)
chr4 (165-217)||(52110013-52110065)
[»] chr3 (5 HSPs)
chr3 (165-217)||(13663152-13663204)
chr3 (165-217)||(46251478-46251530)
chr3 (165-217)||(46251629-46251681)
chr3 (55-132)||(45214930-45215009)
chr3 (165-205)||(45214766-45214806)
[»] chr2 (3 HSPs)
chr2 (165-217)||(45497251-45497303)
chr2 (165-217)||(45504993-45505045)
chr2 (165-205)||(18175880-18175920)
[»] scaffold0202 (1 HSPs)
scaffold0202 (165-217)||(15887-15939)
[»] chr1 (1 HSPs)
chr1 (169-205)||(51826297-51826333)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 37649347 - 37649159
Alignment:
Q  29 aattattccatgttccggccgtacacgtttttatattattgctctcttaaaagaaaattatactattctttctcattgtttgatctgcacgttccagtca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37649347 aattattccatgttccggccgtacacgtttttatattattgctctcttaaaagaaaattatactattctttcttattgtttgatctgcacgttccagtca 37649248  T
Q  129 agaaaaacactgttgtccactattgcagattcattattgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37649247 agaaaaacactgttgtccactattgcagattcattattgttgacaacgttatgttattttgttgttaaccaacaattattattattatt 37649159  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 25936679 - 25936731
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25936679 ttgttgacaacgttatgttattttgttgttaaccaacaattattagtattatt 25936731  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 52110013 - 52110065
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  52110013 ttgttgacaacgttatgttattttgttgttaaccaacaattattagtattatt 52110065  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 13663152 - 13663204
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  13663152 ttgttgacaacgttatgttattttgttgttaaccaacaattattagtattatt 13663204  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 46251530 - 46251478
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  46251530 ttgttgacagcgttatgttattttgttgttaaccaacaattattagtattatt 46251478  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 46251681 - 46251629
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  46251681 ttgttgacaaccttatgttattttgttgttaaccaacaattattagtattatt 46251629  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 45215009 - 45214930
Alignment:
Q  55 gtttttatattattgctctcttaaaagaaa---attatactattctttctcattgtttgatctgcacgttccagtcaagaa 132  Q
    |||||||||||||||||||||||||| |||    ||||| |||| |||||||||| ||||| ||| | |||||||||||||    
T  45215009 gtttttatattattgctctcttaaaaaaaagtttttatattattgtttctcattg-ttgatgtgctcattccagtcaagaa 45214930  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 45214806 - 45214766
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaatt 205  Q
    |||||||||| |||||||||||||||||  |||||||||||    
T  45214806 ttgttgacaatgttatgttattttgttggtaaccaacaatt 45214766  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 45497251 - 45497303
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  45497251 ttgttgacaacgttatgttattttgttgttaaccaacaattattagtattatt 45497303  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 45504993 - 45505045
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  45504993 ttgttgacaacgttatgttattttgttgttaaccaacaattattagtattatt 45505045  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 18175920 - 18175880
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaatt 205  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  18175920 ttgttgacaatgttatgttattttgttgttaaccaacaatt 18175880  T

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Target: scaffold0202 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 15939 - 15887
Alignment:
Q  165 ttgttgacaacgttatgttattttgttgtaaaccaacaattattattattatt 217  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||    
T  15939 ttgttgataacattatgttattttgttgttaaccaacaattattagtattatt 15887  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 51826333 - 51826297
Alignment:
Q  169 tgacaacgttatgttattttgttgtaaaccaacaatt 205  Q
    |||||| |||||||||||||||||| |||||||||||    
T  51826333 tgacaatgttatgttattttgttgttaaccaacaatt 51826297  T

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