View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_219 (Length: 239)

Name: NF1199_low_219
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_219
NF1199_low_219
[»] chr3 (12 HSPs)
chr3 (5-220)||(23467954-23468169)
chr3 (3-220)||(23471458-23471675)
chr3 (3-213)||(23477623-23477833)
chr3 (3-211)||(23382585-23382793)
chr3 (3-220)||(23351020-23351237)
chr3 (39-219)||(23438958-23439138)
chr3 (6-216)||(23453102-23453312)
chr3 (3-220)||(23401236-23401453)
chr3 (3-214)||(23446323-23446534)
chr3 (39-211)||(23403765-23403937)
chr3 (3-211)||(23462348-23462556)
chr3 (42-220)||(23498111-23498289)
[»] scaffold0201 (1 HSPs)
scaffold0201 (3-211)||(10493-10701)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 23467954 - 23468169
Alignment:
Q  5 cattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggaccac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  23467954 cattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttagccgttttaaagactatataccatcgaggatggaccac 23468053  T
Q  105 agacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23468054 agacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagct 23468153  T
Q  205 tgttacactcagttag 220  Q
    ||||||||||||||||    
T  23468154 tgttacactcagttag 23468169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 23471458 - 23471675
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||||||||||| || ||||||   ||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||    
T  23471458 agcattgaatggttttggatattctctgggagactttctaagttgcaacactctttcaattttagctgttttaaagattgtatgccatcaaggatggacc 23471557  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||| |||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |||| ||    
T  23471558 acaaacttaatgcattaatttctgtgcaccctgaaaggtctagttccgtaacaaacccaagtccatgatcatctgataacttattcccgacaatgttaag 23471657  T
Q  203 cttgttacactcagttag 220  Q
    |||||||||  |||||||    
T  23471658 cttgttacatccagttag 23471675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 23477623 - 23477833
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||| ||||||| || ||||||   || ||||||||||||||||  ||| || ||| ||||||||| ||||| ||||||||||||||||    
T  23477623 agcattgaatggtttcggatattctcagggagacattccaagttgcaacactcttgtaatgttagcccttttaaagattgtatgccatcaaggatggacc 23477722  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||| |||| ||    
T  23477723 acagacttaatgcattcatttctgtgcaccctgaaaggtctagttctgtaacagacccaagtccatgatcatctgataacttattcccaacaatgttaag 23477822  T
Q  203 cttgttacact 213  Q
    |||||||||||    
T  23477823 cttgttacact 23477833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 23382585 - 23382793
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||| | || || || ||||||   |||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  23382585 agcattgaatggtttcgcatgttctctgggagacattctaagttgacacactcattcaattttagccgttttaaagactgtataccatcaaggatggacc 23382684  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||  ||  ||| |||||||||||||||||||| ||||||||| |||| ||    
T  23382685 acagacttaatgcattgatttctgtgcaccctgaaaggtctagttctgtaaccgacaaaagtccatgatcatctgataactttttcccaacaatgttaag 23382784  T
Q  203 cttgttaca 211  Q
    |||||||||    
T  23382785 cttgttaca 23382793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 23351020 - 23351237
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||| ||||||| || ||||||   ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  23351020 agcattgaatggtttcggatattctcagggagacattctaagttgcaacactctttcaattttagtcgttttaaagactgtatgccatcaaggatggacc 23351119  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||||||| ||||| ||||||||||||||| || ||||||||||| |||||| |||| || || ||||||| ||||||||| |||||||||  ||| ||    
T  23351120 acagacttagtgcattgatttctgtgcacccagagaggtctagttctgtaacagaccccagtccctgatcatttgataacttattcccaacaaagttaag 23351219  T
Q  203 cttgttacactcagttag 220  Q
     || || |||||||||||    
T  23351220 atttttgcactcagttag 23351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 23438958 - 23439138
Alignment:
Q  39 tctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggaccacagacttaatgcatcgatttctgtgcaccctgaaa 138  Q
    ||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  23438958 tctaagttgcaacactcattcaattttagccgttttaaagatcgtataccatcaagtatggaccatagacttaatgcattgatttctgtgcaccctgaaa 23439057  T
Q  139 ggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagcttgttacactcagtta 219  Q
    ||||||| |  |||||| |||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  23439058 ggtctagctgtgtaacagaccccagtccatgatcatctgataacttattcccaacaatgttaagcttgttacacttagtta 23439138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 23453102 - 23453312
Alignment:
Q  6 attgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggaccaca 105  Q
    |||||||||||||||||||| |||||||||   ||||||||||| ||||| |||||| || || |||||||||| ||||| ||||||||||||||||| |    
T  23453102 attgaatggttttggatattctcggggagactttctaagttgcagcactcattcaatattagctgttttaaagattgtatgccatcaaggatggaccaaa 23453201  T
Q  106 gacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagctt 205  Q
    |||||||||||| ||||||||||||||||||||||||||| |  |||||| |||  || ||||||||||||  |||||| ||||||||| | || |||||    
T  23453202 gacttaatgcattgatttctgtgcaccctgaaaggtctagctttgtaacagaccacagtccatgatcatctcttaacttattcccaacaattttaagctt 23453301  T
Q  206 gttacactcag 216  Q
    |||||||||||    
T  23453302 gttacactcag 23453312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 23401236 - 23401453
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    |||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||    
T  23401236 agcattgaatggttttggatgttgtcagggagaacttataagttgcaacactctttcaattttagtccttttaaagactgtatgccatcaaggatggacc 23401335  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||  |||||| || ||||||||||||| | ||||||||||||||  ||||| | |  || ||||||||||  |||||||| |||||| || |||| ||    
T  23401336 acagttttaatgtattgatttctgtgcactcagaaaggtctagttctttaacagatctcagtccatgatcattggataacttattcccagcattgttcag 23401435  T
Q  203 cttgttacactcagttag 220  Q
    ||||||||| ||||||||    
T  23401436 cttgttacattcagttag 23401453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 23446323 - 23446534
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||||| || || |||||||||   || | |||||||||||| | ||||    ||| ||||||||||||||| ||||||||||| ||||    
T  23446323 agcattgaatggttttgtatgttctcggggagacattccatgttgcaacactcatgcaatgagagccattttaaagactgtatgccatcaaggatagacc 23446422  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||||||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||| |||||||||| || |||||| ||||||||| |||| ||    
T  23446423 acagacttaatgcattgatttctgtgcaccctaaaaggtctagctcggtaacagacccaagtccatgatcatttgttaacttattcccaacaatgttaag 23446522  T
Q  203 cttgttacactc 214  Q
    ||||||||||||    
T  23446523 cttgttacactc 23446534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 23403765 - 23403937
Alignment:
Q  39 tctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggaccacagacttaatgcatcgatttctgtgcaccctgaaa 138  Q
    |||||||||  |||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  23403765 tctaagttgacacactcattcaattttagccgttttaaagactgtataccatcaagtatggaccacagacttgatgcattgatttctgtgcaccctgaaa 23403864  T
Q  139 ggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagcttgttaca 211  Q
    ||||||| || |||||| |||| || ||||||||||||| |||||| ||||||||| |  | |||||||||||    
T  23403865 ggtctagctctgtaacagaccccagtccatgatcatctgttaacttattcccaacaatagtaagcttgttaca 23403937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 23462348 - 23462556
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||||| || || |  ||||||   ||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||     
T  23462348 agcattgaatggttttgtatgttcttagggagacattctaagttgcaacactcattcaattttagccgttttaaagattgtatgccatcaaggatggacg 23462447  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||| || |||||| |||| || ||||||||||||| |||||| ||||||||| |  | ||    
T  23462448 acagacttattgcattgatttctgtgcacccagaaaggtctagctctgtaacagaccccagtccatgatcatctgttaacttattcccaacaatagtaag 23462547  T
Q  203 cttgttaca 211  Q
    |||||||||    
T  23462548 cttgttaca 23462556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 23498111 - 23498289
Alignment:
Q  42 aagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggaccacagacttaatgcatcgatttctgtgcaccctgaaaggt 141  Q
    ||||||||||| |||| ||||    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  23498111 aagttgcaacaatcttgcaatgagagccgtttcaaagattgtatgccatcaaggatggaccacagacttaatgcattgatttctgtgcaccgtgaaaggt 23498210  T
Q  142 ctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgagcttgttacactcagttag 220  Q
     ||||||  ||||| ||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||    
T  23498211 ttagttctataacagacccaagtccatgatcatctgataacttattcccaacaatgttaagcttgttacactcggttag 23498289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 10493 - 10701
Alignment:
Q  3 agcattgaatggttttggatattgtcggggagaacatctaagttgcaacactctttcaattttggccgttttaaagactgtataccatcaaggatggacc 102  Q
    ||||||||||||||||| || ||  | ||||||   |||||||||||||||   |||||| || ||||||||||||| ||||| ||||||||||||||||    
T  10493 agcattgaatggttttgtatgttcacagggagacattctaagttgcaacacctattcaatgttagccgttttaaagaatgtatgccatcaaggatggacc 10592  T
Q  103 acagacttaatgcatcgatttctgtgcaccctgaaaggtctagttcggtaacaaacccaagcccatgatcatctgataacttcttcccaacagtgttgag 202  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||  |||||  |   ||  |||||||||||||||||||| ||||||||| |||| ||    
T  10593 acagacttaatgcattgatttctgtacaccctgaaaggtctagttgtgtaaccgataaaaatccatgatcatctgataactttttcccaacaatgttaag 10692  T
Q  203 cttgttaca 211  Q
    |||||||||    
T  10693 cttgttaca 10701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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