View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_22 (Length: 590)
Name: NF1199_low_22
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 30 - 584
Target Start/End: Complemental strand, 41473141 - 41472591
Alignment:
| Q |
30 |
ttctagacagctactatcattctctatttttgtttttgacattgtaggttctattatattggaaacgtttatttcgaccctagatttttgttatgatact |
129 |
Q |
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| T |
41473141 |
ttctagacagctactatcattctctatttttgtttttgacattgtaggttcttttatattggaaacgtttatttcgactctagatttttgttatgatact |
41473042 |
T |
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| Q |
130 |
tttatccctcaagtgtttcaaagaattgtcatgtgtattaaatgctactagtatacataaagttataaggacaacaatgaacattggcatttgctgcaaa |
229 |
Q |
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| T |
41473041 |
tttatccctcaagagtttgaaagaattgtcatgtgtattaaatgctactagtatacataaagttataaggacaacaatgaacattggcatttgctgcaaa |
41472942 |
T |
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| Q |
230 |
acaacttattannnnnnncacctcaattagtatttctaattgtctatctaattgcatgtttctattaaccactgttnnnnnnnnnttactattgagttta |
329 |
Q |
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| T |
41472941 |
acaacttattatttttttcacctcaattagtatttctaattgtctatctaattgcatgtttctattaaccactgtt-caaaaaaattactattgagttta |
41472843 |
T |
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| Q |
330 |
atgatctttccatctatgctctttaactaatttctaagacaaatatggtgaataggaccaaaccatgatactttatgctttagaacttcagacattgaga |
429 |
Q |
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| T |
41472842 |
aagatctttccatctatgctctttaactaatttctaagacaaatacggtgaataggaccaaaccatgatactttatgctttagaacttcagacattgaga |
41472743 |
T |
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| Q |
430 |
atgactttctgttttagaggtttagattttgagaatgtgtttgcatttatattaatcgattgattatgatgatgtctttgtaaatatagcaagattcaaa |
529 |
Q |
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| T |
41472742 |
acgactttctgttttagaggtttagatattgagaatgtgtttgcatttatattaatcgattgatt---atgatgtctttgtaaatatagcaagattcaaa |
41472646 |
T |
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| Q |
530 |
tgcgtacaagttgtgtcaatttagtagcaagagctccacgttgaagaattatcta |
584 |
Q |
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| T |
41472645 |
cgcgtacaagttgtgtcaatttagtagcaagagctccacgttgaagaattatcta |
41472591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 4219439 - 4219549
Alignment:
| Q |
58 |
tttgtttttgacattgtaggttctattatattggaaacgtttatttcgaccctagatttttgttatgatacttttatccctcaagtgtttcaaagaattg |
157 |
Q |
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| T |
4219439 |
tttgtttgtgacattgtagattctattatatctgaaatgtttatttggactttagatttctgctattctacctttatgccataagtgtttgaaagaatta |
4219538 |
T |
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| Q |
158 |
tcatgtgtatt |
168 |
Q |
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| T |
4219539 |
tcatgtgtatt |
4219549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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