View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1199_low_220 (Length: 234)
Name: NF1199_low_220
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1199_low_220 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 24232323 - 24232096
Alignment:
| Q |
7 |
tgattgtgttttgttctttcataaggctctcggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatac |
106 |
Q |
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| T |
24232323 |
tgattgtgttttgtcctttcataaggctcttggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatac |
24232224 |
T |
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| Q |
107 |
aagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcacctgcagacccttctcaaatcaaag |
206 |
Q |
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| T |
24232223 |
aagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcccctgcagacccttctcagatcaaag |
24232124 |
T |
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| Q |
207 |
cggcggatcaatgggtcaaatttctata |
234 |
Q |
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| T |
24232123 |
cggcggatcaatgggttaaatttctata |
24232096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 24243998 - 24243848
Alignment:
| Q |
43 |
tgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatacaagatgggtggaatagaacttaaaggtccttgtaag |
142 |
Q |
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| T |
24243998 |
tgcttggaaggaagcatgtgcatcaacaactgcagcgaaaatagtgattccagctggtacataccagttgaatggaattgaacttaaaggtccttgtaag |
24243899 |
T |
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| Q |
143 |
gcacctattgaagttcaagttgatggaacaattcaagcacctgcagaccct |
193 |
Q |
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| T |
24243898 |
gctcctattgaacttcaagttgatggaacaattcaagcacctgcagaccct |
24243848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 24298200 - 24298350
Alignment:
| Q |
43 |
tgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatacaagatgggtggaatagaacttaaaggtccttgtaag |
142 |
Q |
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| T |
24298200 |
tgcttggaaggaagcatgtgcatcaacaactgcagcgaaaatagtgattccagctggtacataccagttgaatggaattgaacttaaaggtccttgtaag |
24298299 |
T |
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| Q |
143 |
gcacctattgaagttcaagttgatggaacaattcaagcacctgcagaccct |
193 |
Q |
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| T |
24298300 |
gctcctattgaacttcaagttgatggaacaattcaagcacctgcagaccct |
24298350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 42843384 - 42843524
Alignment:
| Q |
40 |
aaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatacaagatgggtggaatagaacttaaaggtccttgt |
139 |
Q |
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| T |
42843384 |
aaatgcttggaaagcagcatgtggatcaacaactgcaagcaaagttattattccaagagggatatacaagatacatgctgtagatgtaaaaggtccttgt |
42843483 |
T |
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| Q |
140 |
aaggcacctattgaagttcaagttgatggaacaattcaagc |
180 |
Q |
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| T |
42843484 |
aaggctcccattgaagttcaagttgatggcacaattcaagc |
42843524 |
T |
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