View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1199_low_224 (Length: 228)

Name: NF1199_low_224
Description: NF1199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1199_low_224
NF1199_low_224
[»] chr5 (10 HSPs)
chr5 (1-228)||(244883-245110)
chr5 (1-228)||(29949599-29949826)
chr5 (1-228)||(29951237-29951464)
chr5 (129-228)||(38936729-38936828)
chr5 (46-228)||(16780624-16780804)
chr5 (164-228)||(21352695-21352759)
chr5 (112-221)||(23660940-23661049)
chr5 (112-221)||(23797521-23797630)
chr5 (176-228)||(21352618-21352670)
chr5 (66-215)||(258977-259125)
[»] chr4 (11 HSPs)
chr4 (1-228)||(15018085-15018312)
chr4 (1-228)||(15019725-15019952)
chr4 (1-228)||(13518405-13518632)
chr4 (21-228)||(9399084-9399291)
chr4 (1-227)||(39488595-39488821)
chr4 (54-225)||(13517922-13518093)
chr4 (22-227)||(11098512-11098718)
chr4 (22-227)||(42872895-42873099)
chr4 (164-228)||(46690520-46690584)
chr4 (22-221)||(21377220-21377418)
chr4 (43-141)||(30874982-30875080)
[»] chr7 (9 HSPs)
chr7 (1-228)||(9647380-9647607)
chr7 (20-228)||(23446674-23446882)
chr7 (1-228)||(7842688-7842915)
chr7 (1-225)||(9595881-9596105)
chr7 (20-228)||(40998683-40998891)
chr7 (1-225)||(9646844-9647068)
chr7 (12-228)||(41000534-41000751)
chr7 (197-228)||(24790134-24790165)
chr7 (197-228)||(24790156-24790187)
[»] chr1 (11 HSPs)
chr1 (1-228)||(36233320-36233547)
chr1 (1-228)||(24157498-24157725)
chr1 (3-228)||(20189244-20189469)
chr1 (45-228)||(36233845-36234028)
chr1 (2-228)||(20190876-20191102)
chr1 (1-215)||(48462830-48463044)
chr1 (30-225)||(48463831-48464023)
chr1 (21-215)||(20759128-20759315)
chr1 (22-227)||(40553916-40554120)
chr1 (167-227)||(31390162-31390221)
chr1 (167-227)||(40554666-40554725)
[»] chr2 (9 HSPs)
chr2 (1-227)||(22300341-22300567)
chr2 (20-228)||(18535766-18535974)
chr2 (20-228)||(24806748-24806956)
chr2 (30-228)||(24808614-24808812)
chr2 (97-228)||(31974034-31974165)
chr2 (116-227)||(22299703-22299814)
chr2 (22-227)||(44793275-44793479)
chr2 (183-228)||(24806102-24806147)
chr2 (116-145)||(31973965-31973994)
[»] chr8 (6 HSPs)
chr8 (1-227)||(8366120-8366346)
chr8 (20-228)||(17278139-17278346)
chr8 (51-228)||(17277421-17277598)
chr8 (88-225)||(6778187-6778323)
chr8 (22-227)||(17857176-17857380)
chr8 (167-228)||(23016372-23016432)
[»] chr3 (10 HSPs)
chr3 (20-228)||(5554255-5554463)
chr3 (20-228)||(16346646-16346854)
chr3 (1-227)||(25531649-25531875)
chr3 (20-228)||(5553210-5553418)
chr3 (20-228)||(23460214-23460422)
chr3 (20-228)||(47418440-47418648)
chr3 (20-228)||(16022616-16022824)
chr3 (2-228)||(47566488-47566713)
chr3 (45-181)||(32570538-32570674)
chr3 (146-192)||(25532821-25532867)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-228)||(54869-55077)
[»] scaffold0018 (1 HSPs)
scaffold0018 (30-228)||(558-756)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-228)||(86595-86818)
scaffold0026 (137-228)||(643-734)
[»] scaffold0013 (1 HSPs)
scaffold0013 (20-228)||(241058-241266)
[»] scaffold0146 (1 HSPs)
scaffold0146 (69-228)||(31603-31762)
[»] scaffold0096 (1 HSPs)
scaffold0096 (129-228)||(22411-22510)
[»] scaffold0021 (2 HSPs)
scaffold0021 (121-228)||(17669-17776)
scaffold0021 (121-228)||(27200-27307)
[»] scaffold0269 (2 HSPs)
scaffold0269 (1-107)||(1848-1954)
scaffold0269 (162-228)||(1973-2039)
[»] scaffold0180 (1 HSPs)
scaffold0180 (22-221)||(11265-11463)
[»] scaffold0094 (1 HSPs)
scaffold0094 (22-228)||(13365-13570)
[»] scaffold0321 (1 HSPs)
scaffold0321 (22-227)||(5233-5437)
[»] scaffold0139 (1 HSPs)
scaffold0139 (22-228)||(4237-4442)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-227)||(375180-375379)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 244883 - 245110
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  244883 ccacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 244982  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  244983 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 245082  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  245083 taatttggttcttttattccacaatgac 245110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29949826 - 29949599
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  29949826 ccacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaac 29949727  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  29949726 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 29949627  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  29949626 taatttggttcttttattccacaatgac 29949599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29951464 - 29951237
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  29951464 ccacgttttcaacttacaactcattttacaccattaaatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaac 29951365  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  29951364 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 29951265  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  29951264 taatttggttcttttattccacaatgac 29951237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 38936828 - 38936729
Alignment:
Q  129 cagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||    
T  38936828 cagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgac 38936729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 16780804 - 16780624
Alignment:
Q  46 aatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 145  Q
    |||||| |||||||| ||||||| ||| || ||| || ||  |||| ||||||| || | ||||||| |||||| ||||||||||||  ||| |||||||    
T  16780804 aatttgttcttgagttaaacagacgaaatgcagataactttctaagatttccaaggactcaaagatcgcctcaatcggacatccagaattccggatatag 16780705  T
Q  146 ccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||| | ||| ||||||| |||||||||| |||| ||||| ||||||||||||   |||||||||| |||||||||    
T  16780704 ccaaaacaagacaaacacatcatgaactacgaaaataaaacattgaa-ccaaaattaattcaattcttttatt-cacaatgac 16780624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 21352695 - 21352759
Alignment:
Q  164 atcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21352695 atcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgac 21352759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 23661049 - 23660940
Alignment:
Q  112 cacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttc 211  Q
    |||||||| |||||||||| | ||| ||||||  | ||||||||| || ||||| || |||||||||||| | || ||||| ||||||||||||||||||    
T  23661049 cacctcaatcggacatccataactctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatac-ttgaaaccaaaattaatttggttc 23660951  T
Q  212 -ttttattcca 221  Q
     ||||||||||    
T  23660950 attttattcca 23660940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 23797521 - 23797630
Alignment:
Q  112 cacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttc 211  Q
    |||||||| |||||||||| | ||| ||||||  | ||||||||| || ||||| || |||||||||||| | || ||||| ||||||||||||||||||    
T  23797521 cacctcaatcggacatccataactctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatac-ttgaaaccaaaattaatttggttc 23797619  T
Q  212 -ttttattcca 221  Q
     ||||||||||    
T  23797620 attttattcca 23797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 21352670 - 21352618
Alignment:
Q  176 gaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||| ||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgac 21352618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 259125 - 258977
Alignment:
Q  66 agatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatat 165  Q
    ||||||| |||||| ||||   ||||||||||  ||| | ||| ||||| ||||  ||||||| ||||||| |||||||||| |||||||| |||  |      
T  259125 agatgaattgtagacaattctctaagctttccgtcgaatcaaatatcacgtcaattggacatctagagctcaagatatagccgaaacaagacagaggtga 259026  T
Q  166 catgacctacgaaaattaaactttgaacccaaaattaatttggttctttt 215  Q
    ||| || ||| ||||| | |||| ||||| |||| |||||||||||||||    
T  259025 catcacttacaaaaataacacttcgaacc-aaaactaatttggttctttt 258977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15018085 - 15018312
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15018085 ccacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 15018184  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  15018185 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 15018284  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  15018285 taatttggttcttttattccacaatgac 15018312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15019725 - 15019952
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15019725 ccacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 15019824  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  15019825 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 15019924  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  15019925 taatttggttcttttattccacaatgac 15019952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13518405 - 13518632
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  13518405 ccacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaac 13518504  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  13518505 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 13518604  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  13518605 taatttggttcttttattccacaatgac 13518632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 9399084 - 9399291
Alignment:
Q  21 tcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9399084 tcattctacaccattaaatattccgaatttgctcttgagtcaaacagacgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 9399183  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9399184 cggacatccagagctccatatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcc 9399283  T
Q  221 acaatgac 228  Q
    ||||||||    
T  9399284 acaatgac 9399291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39488595 - 39488821
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39488595 ccacgttttcaacttacaactcattttaaaccattaaatattctgagtttgctcttgagtcaaacagatgaattgtggagaatttcgtaagctttccaac 39488694  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  39488695 gagttaaagatcacctcaaacggacatctagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 39488794  T
Q  201 taatttggttcttttattccacaatga 227  Q
    ||||| ||||||||||||||| |||||    
T  39488795 taattaggttcttttattccataatga 39488821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 13517922 - 13518093
Alignment:
Q  54 cttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaaca 153  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| ||||||||||||    
T  13517922 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaaca 13518021  T
Q  154 agatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaat 225  Q
    ||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  13518022 agacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaat 13518093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 11098718 - 11098512
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  11098718 cattttacaccatgatatatgccgattttgcttatgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11098620  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacc-caaaattaatttggttcttttattc 219  Q
    ||||  |||||||||| ||||||    || |||||| ||| | || ||||||||||||||| | | ||||||||  ||||| |||||| |||||||||||    
T  11098619 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattc 11098520  T
Q  220 cacaatga 227  Q
    || |||||    
T  11098519 cataatga 11098512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 42872895 - 42873099
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  | |||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  42872895 cattttacaccatgatatatgccgattttgcttataagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 42872993  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    |||   |||||||||| ||||||    || |||||| | | | || ||||||||||||||| | | |||||||| ||||| |||||| ||||||||||||    
T  42872994 cgggattccagagctctagatatgatgaatacaagacatatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 42873092  T
Q  221 acaatga 227  Q
    | |||||    
T  42873093 ataatga 42873099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 46690584 - 46690520
Alignment:
Q  164 atcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||||||||||| ||||||| ||   ||||||||||| |||||||||||||||| ||||    
T  46690584 atcatgacctacgaaaataaaactttaaatttaaaattaatttagttcttttattccacactgac 46690520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 21377418 - 21377220
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaac 121  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| ||||||  |||| |||  ||||||| |   | |||||||||||||| |    
T  21377418 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgattttgtaccctttccatcacttcaaagatcacctcaatc 21377319  T
Q  122 ggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcca 221  Q
     ||  | || ||||| ||||||    || | |||| ||| | || ||||||||||||||| ||| | |||||| ||||| ||||||||||||||||||||    
T  21377318 agagttgcaaagctctagatatgatgaatataagacagatacataatgacctacgaaaataaaaatctgaaccaaaaat-aatttggttcttttattcca 21377220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 30874982 - 30875080
Alignment:
Q  43 ccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagat 141  Q
    ||||||||| ||||||||  ||  |||||| ||||||   |||  ||| ||||||||||| ||||||||||| | |||| |||||||||||||| ||||    
T  30874982 ccgaatttgatcttgagtttaaatgatgaaatgtagaattttttttaaactttccaacgaattaaagatcacgttaaacagacatccagagctcaagat 30875080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9647380 - 9647607
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  9647380 ccacgttttcaacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaac 9647479  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  9647480 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 9647579  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  9647580 taatttggttcttttattccacaatgac 9647607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 23446882 - 23446674
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  23446882 ctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaatttggtaagctttccaacgagttaaagatcacctcaa 23446783  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23446782 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattc 23446683  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  23446682 cacaatgac 23446674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7842915 - 7842688
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    |||||||||  |||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||    
T  7842915 ccacgttttctacttacaactcattttaaaccattaaatattccgaatttgcacttgagtcaaacggatgaattgtatagaatttcgtaagctttccaac 7842816  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||    
T  7842815 gagttaaagatcacctcaaacggacatccagagctctagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaat 7842716  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  7842715 taatttggttcttttattccacaatgac 7842688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9595881 - 9596105
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9595881 ccacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 9595980  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||| |||||  |||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |    
T  9595981 gagttaaagatcacctcaaacgaacatcgggagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagt 9596080  T
Q  201 taatttggttcttttattccacaat 225  Q
    |||||||||||||||||||||||||    
T  9596081 taatttggttcttttattccacaat 9596105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 40998683 - 40998891
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||||| ||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  40998683 ctcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaa 40998782  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  40998783 acggacatccagagctccagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattc 40998882  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  40998883 cacaatgac 40998891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9646844 - 9647068
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9646844 ccacgttttcaacttacaactcattttaagccattaaatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 9646943  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||| |||||   ||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |    
T  9646944 gagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagt 9647043  T
Q  201 taatttggttcttttattccacaat 225  Q
    |||||||||||||||||||||||||    
T  9647044 taatttggttcttttattccacaat 9647068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 41000534 - 41000751
Alignment:
Q  12 acttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagat 111  Q
    |||| ||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  41000534 acttacaactcattttgcaccattaaatattaagaatttgctcttgaatcaaacagatgaaatgtagagaatttcgcaagctttccaacgagttagagat 41000633  T
Q  112 cacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacg-aaaattaaactttgaacccaaaattaatttggtt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  41000634 cacctcaaacggacatccagagctccagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaattaatttggtt 41000733  T
Q  211 cttttattccacaatgac 228  Q
    ||||||||||||||||||    
T  41000734 cttttattccacaatgac 41000751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 24790165 - 24790134
Alignment:
Q  197 aaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||||||    
T  24790165 aaattaatttggttcttttattccacaatgac 24790134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 24790156 - 24790187
Alignment:
Q  197 aaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||||||    
T  24790156 aaattaatttggttcttttattccacaatgac 24790187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36233547 - 36233320
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36233547 ccacgttttcaacttacaactcattttacaccattaaatatttcgaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaac 36233448  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  36233447 gagttaaagatcgcctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 36233348  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||    
T  36233347 taatttggttcttttattccacaatgac 36233320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24157498 - 24157725
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  24157498 ccacgttttcaacttacaactcattttaaaccattaaatattccgaattttctcttgagttaaacagatgaaatgtagagaatttcgtaagctttccaac 24157597  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  24157598 gagttaaagatcacctcaaacggacatccagagctccagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 24157697  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||| ||||||||||||||| ||||||    
T  24157698 taattaggttcttttattccataatgac 24157725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 20189244 - 20189469
Alignment:
Q  3 acgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacga 102  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |    
T  20189244 acgttttcaacttacaactcactttacaccattaaatattccgactttgctcttgagtcaaacagatgaaatgtagagaattttgtaaactttccaacaa 20189343  T
Q  103 gttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaatta 202  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  20189344 gttgaagatcacctcaaacggacatccagaactccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaatta 20189443  T
Q  203 atttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||    
T  20189444 atttggttcttttattccacaatgac 20189469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 45 - 228
Target Start/End: Original strand, 36233845 - 36234028
Alignment:
Q  45 gaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatata 144  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36233845 gaatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatata 36233944  T
Q  145 gccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36233945 gccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 36234028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 20190876 - 20191102
Alignment:
Q  2 cacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacg 101  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |    
T  20190876 cacgttttcaacttacaactcattttaaaacattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagataatttagtaagctttccaaag 20190975  T
Q  102 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaatt 201  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  20190976 agttaaagatcacctcaaacggacatccaaagctccagatatagtcaaaacaagacagacatatcatgacatacgaaaataaaactttgaacccaaaatt 20191075  T
Q  202 aatttggttcttttattccacaatgac 228  Q
    |||| ||||||||||||| | ||||||    
T  20191076 aattaggttcttttattctataatgac 20191102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48463044 - 48462830
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  48463044 ccacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaac 48462945  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||| |||||||||| | |||||    
T  48462944 gagttaaagatcacatcaaacggatatccagagctccaaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaat 48462845  T
Q  201 taatttggttctttt 215  Q
    ||||||| |||||||    
T  48462844 taatttgattctttt 48462830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 48463831 - 48464023
Alignment:
Q  30 accattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 129  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48463831 accattaaaaattccgaatttgct--tgagtcaaacagatgaaatgtaaagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 48463928  T
Q  130 agagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaat 225  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  48463929 agagctccagatatagccaaaacaagacagacatatcatgacctac-aaaaataaaatttgaacccaaaattattttggttcttttattccacaat 48464023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 20759315 - 20759128
Alignment:
Q  21 tcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    |||||||||||||||||||||||||||||||||||| || ||||         |||||||||||| |||| |||||||  |||| |||||| ||||||      
T  20759315 tcattttacaccattaaatattccgaatttgctcttcagacaaaa--------tgtagagaattttgtaaactttccatagagtaaaagattacctcact 20759224  T
Q  121 cggacatccagagctccagatata--gccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttctttt 215  Q
    |||||||||||| ||||| |||||  |||||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  20759223 cggacatccagaactccatatatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaa-ccaaaattaatttggttctttt 20759128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 40554120 - 40553916
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| | || ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  40554120 cattttacaccatgatatatgccgattttgcttctgagtccagcatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 40554022  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  |||||||||| ||||||    || |||||| ||| | || ||||||||||||||| | | |||||| |||||| ||||||| ||||||||||||    
T  40554021 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 40553923  T
Q  221 acaatga 227  Q
    | |||||    
T  40553922 ataatga 40553916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 31390221 - 31390162
Alignment:
Q  167 atgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatga 227  Q
    ||||||||||||||| | | |||||||| ||||| |||||| ||||||||||||| |||||    
T  31390221 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatga 31390162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 40554666 - 40554725
Alignment:
Q  167 atgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatga 227  Q
    ||||||||||||||| | | |||||||| ||||| |||||| ||||||||||||| |||||    
T  40554666 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatga 40554725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22300341 - 22300567
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  22300341 ccacgttttcaacttacaactcattttaaaccattaaatattccgaatttgctcttgagtcaaacagatgaaatgtagagaattccgtaagctttccaac 22300440  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
     |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  22300441 aagttaaagatcacctcaaacggacatccagagctccggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 22300540  T
Q  201 taatttggttcttttattccacaatga 227  Q
    |||||||||||||||||||||||||||    
T  22300541 taatttggttcttttattccacaatga 22300567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 18535766 - 18535974
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  18535766 ctcattctgcaccattaaatattccgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaa 18535865  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  18535866 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattc 18535965  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  18535966 cacaatgac 18535974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 24806748 - 24806956
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24806748 ctcattctgcaccattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 24806847  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  24806848 acggacatccggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattc 24806947  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  24806948 cacaatgac 24806956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 24808614 - 24808812
Alignment:
Q  30 accattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 129  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  24808614 accattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatcc 24808713  T
Q  130 agagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
     |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24808714 ggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 24808812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 31974034 - 31974165
Alignment:
Q  97 caacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaaccca 196  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||    
T  31974034 caacgagttaaagatcacctcaaacggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaaccca 31974133  T
Q  197 aaattaatttggttcttttattccacaatgac 228  Q
    ||||||||| ||||||||||||||| ||||||    
T  31974134 aaattaattaggttcttttattccataatgac 31974165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 22299814 - 22299703
Alignment:
Q  116 tcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttctttt 215  Q
    |||| |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22299814 tcaagcggacatccaaagctccagatataggcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttt 22299715  T
Q  216 attccacaatga 227  Q
    ||||||||||||    
T  22299714 attccacaatga 22299703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 44793275 - 44793479
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  44793275 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 44793373  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  |||||||||| ||||||    || |||||| ||| | || ||||||||||||||| | | |||||| |||||| ||||||| ||||||||||||    
T  44793374 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 44793472  T
Q  221 acaatga 227  Q
    | |||||    
T  44793473 ataatga 44793479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 24806147 - 24806102
Alignment:
Q  183 aaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  24806147 aaacattgaacccaaaattaaattggttcttttattccacaatgac 24806102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 31973994 - 31973965
Alignment:
Q  116 tcaaacggacatccagagctccagatatag 145  Q
    ||||||||||||||||||||||||||||||    
T  31973994 tcaaacggacatccagagctccagatatag 31973965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8366346 - 8366120
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| |||    
T  8366346 ccacgttttcaacttacaactcattttaaaccgttaaatattccgaatttgctcttgagtcaaatagataaaatgtagagaattccgtaagctttcaaac 8366247  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  8366246 gagttaaagatcacctcaaacggacatccagagctccaaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 8366147  T
Q  201 taatttggttcttttattccacaatga 227  Q
    |||||||||||||||||||||||||||    
T  8366146 taatttggttcttttattccacaatga 8366120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 17278139 - 17278346
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  17278139 ctcattctacaccactaaatattccgaatttgcttttgagtcaaacagacgaaatgtagaaaatttcgtaagctttccaatgagttaaagatcacctcaa 17278238  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  17278239 acggacatctagagctccagatatagccaaaacaagacagacatatcatgacttacgaaaa-taaactttggacccaaaattaatttggttcttttattc 17278337  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  17278338 cacaatgac 17278346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 17277598 - 17277421
Alignment:
Q  51 gctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaa 150  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17277598 gctcctgagtcaaacagacgaaatgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaa 17277499  T
Q  151 acaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17277498 acaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattccacaatgac 17277421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 6778187 - 6778323
Alignment:
Q  88 taagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaact 187  Q
    ||||||||| || || | ||||| |||||||  || | || |||||||||| ||||||||||||||||| |||||||||||||| |  | |||| |||||    
T  6778187 taagctttctaaagactcaaagaacacctcactcgaatattcagagctccaaatatagccaaaacaagacagacatatcatgacatgtgtaaataaaact 6778286  T
Q  188 ttgaacccaaaattaatttggttcttttattccacaat 225  Q
    | ||| |||||||||||| |||||||||||||||||||    
T  6778287 tagaa-ccaaaattaattcggttcttttattccacaat 6778323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 17857380 - 17857176
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  17857380 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 17857282  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  |||||||||| ||||||    || |||||| ||| | || ||||||||||||||| | | |||||| |||||| ||||||| ||||||||||||    
T  17857281 cggagttccagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 17857183  T
Q  221 acaatga 227  Q
    | |||||    
T  17857182 ataatga 17857176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 23016372 - 23016432
Alignment:
Q  167 atgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||||||| | | |||||||| ||||| |||||| ||||||||||||| ||||||    
T  23016372 atgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattccataatgac 23016432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 5554255 - 5554463
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5554255 ctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctatccaacgagttaaagatcacctcaa 5554354  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  5554355 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattc 5554454  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  5554455 cacaatgac 5554463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 16346854 - 16346646
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16346854 ctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 16346755  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16346754 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattc 16346655  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  16346654 cacaatgac 16346646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25531875 - 25531649
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| ||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||    
T  25531875 ccacgttttcaacttacaactcattttaaaccattaaatattctgaatttgctcttaagtcaaacagatgaaatgtagagaattccataagctttccaac 25531776  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  25531775 gagttaaagatcacctcaaacggacatccagagctccagatatagtcaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaat 25531676  T
Q  201 taatttggttcttttattccacaatga 227  Q
    ||||||||||||||| ||| |||||||    
T  25531675 taatttggttctttttttctacaatga 25531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 5553418 - 5553210
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5553418 ctcattctgcaccattaaatatttcgaatttgctcttgaattaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 5553319  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||     
T  5553318 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattt 5553219  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  5553218 cacaatgac 5553210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 23460422 - 23460214
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23460422 ctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 23460323  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23460322 acggatatccagagctccagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattc 23460223  T
Q  220 cacaatgac 228  Q
     ||||||||    
T  23460222 tacaatgac 23460214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 47418440 - 47418648
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  47418440 ctcattctgcaccattaaatattctgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaa 47418539  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  47418540 acggacatccagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattc 47418639  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  47418640 cacaatgac 47418648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 16022616 - 16022824
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  16022616 ctcattctacaccactaaatattccgaatttgatcttgagtcaaacagacgaaatgtagagaacttcgtaagctttccaacgagttaaagaccacctcaa 16022715  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16022716 acggacatccagagcttcagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattc 16022815  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  16022816 cacaatgac 16022824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 47566713 - 47566488
Alignment:
Q  2 cacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacg 101  Q
    ||||| || ||||| || |||||| ||||||||||||||||  ||||||||||  |||||||||||| ||| |||| ||||||| |||||||||||||||    
T  47566713 cacgtcttcaacttacagctcattctacaccattaaatattttgaatttgctc--gagtcaaacagacgaaatgtaaagaattttgtaagctttccaacg 47566616  T
Q  102 agttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagac--atatcatgacctacgaaaattaaactttgaacccaaaa 199  Q
    | |||||||||||||||| || ||||||| |||||||||||||||||| |||||| | ||  ||||||||| ||||||||| |||| ||| ||  |||||    
T  47566615 aattaaagatcacctcaatcgaacatccatagctccagatatagccaagacaagacaaacatatatcatgatctacgaaaa-taaaattttaaatcaaaa 47566517  T
Q  200 ttaatttggttcttttattccacaatgac 228  Q
    |||| |   ||||||||||||||||||||    
T  47566516 ttaaatcaattcttttattccacaatgac 47566488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 32570674 - 32570538
Alignment:
Q  45 gaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatata 144  Q
    ||||||||||| |||||||||| |  || |||||| ||||| |||||||||||||||| ||||||||||||||||    ||||||||| |||||||||||    
T  32570674 gaatttgctctcgagtcaaacatacaaaatgtagataattttgtaagctttccaacgaattaaagatcacctcaatataacatccagaactccagatata 32570575  T
Q  145 gccaaaacaagatagacatatcatgacctacgaaaat 181  Q
    |  ||||||| |||||||||| |||| ||||||||||    
T  32570574 gtaaaaacaaaatagacatataatgatctacgaaaat 32570538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 25532821 - 25532867
Alignment:
Q  146 ccaaaacaagatagacatatcatgacctacgaaaattaaactttgaa 192  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  25532821 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaa 25532867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 55077 - 54869
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  55077 ctcattctgcaccattaaatattccgaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaa 54978  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54977 acggacatccagagctccagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattc 54878  T
Q  220 cacaatgac 228  Q
    |||||||||    
T  54877 cacaatgac 54869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 558 - 756
Alignment:
Q  30 accattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatcc 129  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  558 accattaaatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatcc 657  T
Q  130 agagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
     |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  658 ggagctccagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 86818 - 86595
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||    
T  86818 ccacgttttcagcttacaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaaatttagagaatttcgtaagctttcaaac 86719  T
Q  101 gagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaat 200  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||||    ||| |||||||||||||| ||||| |||| |||||||||||||    
T  86718 gagttaaagatcacctcaaacggacatcaggagctccatatatagccaaaaca----agagatatcatgacctacaaaaataaaacattgaacccaaaat 86623  T
Q  201 taatttggttcttttattccacaatgac 228  Q
    ||||||||||| ||||||||||||||||    
T  86622 taatttggttcctttattccacaatgac 86595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 643 - 734
Alignment:
Q  137 cagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||    
T  643 cagatatagccaaaacaagatagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgac 734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 241266 - 241058
Alignment:
Q  20 ctcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 119  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  241266 ctcattctacaccactaaatattccgaatttgctcctgagtcaaaaagacgaaatgtagagaacttcgtaagctttccaacgagttaaagatcacctcaa 241167  T
Q  120 acggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattc 219  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  241166 acggacatccagagcttcagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattc 241067  T
Q  220 cacaatgac 228  Q
      |||||||    
T  241066 tgcaatgac 241058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 31762 - 31603
Alignment:
Q  69 tgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagatagacatatcat 168  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  169 gacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgac 31603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 22510 - 22411
Alignment:
Q  129 cagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22510 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 22411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 17776 - 17669
Alignment:
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  17776 cggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattca 17677  T
Q  221 acaatgac 228  Q
    ||| ||||    
T  17676 acactgac 17669  T

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Target: scaffold0021; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 27307 - 27200
Alignment:
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  27307 cggacatccagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattca 27208  T
Q  221 acaatgac 228  Q
    ||| ||||    
T  27207 acactgac 27200  T

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Target: scaffold0269 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 1848 - 1954
Alignment:
Q  1 ccacgtttttaacttgcaactcattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaac 100  Q
    ||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||    
T  1848 ccacgttttcaaattacaactcattttaaaccattaaatattccgaatttgctcttgagtcagacagatgaaatgtagagaattccataagctttccaac 1947  T
Q  101 gagttaa 107  Q
    |||||||    
T  1948 gagttaa 1954  T

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Target: scaffold0269; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 1973 - 2039
Alignment:
Q  162 atatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattccacaatgac 228  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1973 atatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 11265 - 11463
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  11265 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 11363  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  | |||||||| ||||||    || |||||| ||| | || ||||||||||||||| | | |||||| |||||| ||||||| ||||||||||||    
T  11364 cggagttgcagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 11462  T

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Target: scaffold0094 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 13365 - 13570
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||  | |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  13365 cattttacaccatgatatatgccgattttgcttctgaacccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 13463  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  |  ||||||| ||||||    || |||| | ||| | || ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  13464 cggagttgtagagctctagatatgatgaatacaaaacagatacataatgacctacgaaaataaaaatttgaacccaaaa-taatttggttcttttattcc 13562  T
Q  221 acaatgac 228  Q
    | ||||||    
T  13563 ataatgac 13570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 5437 - 5233
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| |||||| |||||| |||  ||||||||||  | ||||||||||||||     
T  5437 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaat 5339  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  ||||||| || ||||||    || |||||| | | | || ||||||||||||||| | | |||||| |||||| ||||||| ||||||||||||    
T  5338 cggagttccagagttctagatatgatgaatacaagacacatacataatgacctacgaaaataacaatttgaa-ccaaaaataatttgattcttttattcc 5240  T
Q  221 acaatga 227  Q
    | |||||    
T  5239 ataatga 5233  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 4442 - 4237
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaa 120  Q
    ||||||||||||| | || | |||| ||||||  ||||||||||| ||||| |||||| |||||| |||  ||||| ||||  ||||||||||||||||     
T  4442 cattttacaccatgatatctgccgattttgcttctgagtcaaacatatgaaatgtagatgaattt-gtaccctttcgaacgctttaaagatcacctcaat 4344  T
Q  121 cggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcc 220  Q
    ||||  |  ||||||| | ||||    || |||| | ||| | || ||||||||||||||| | | |||||||| ||||| |||||| ||||||||||||    
T  4343 cggagttgtagagctctaaatatgatgaatacaatacagatacataatgacctacgaaaataacaatttgaaccaaaaat-aatttgattcttttattcc 4245  T
Q  221 acaatgac 228  Q
    | ||||||    
T  4244 ataatgac 4237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 375180 - 375379
Alignment:
Q  22 cattttacaccattaaatattccgaatttgctcttgagtcaaacagatgaagtgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaac 121  Q
    ||||||||||||| | |||| |||| ||||||  |||||| |||| ||||| ||||    |||| |||  ||||||||||  | |||||||||||||| |    
T  375180 cattttacaccatgatatatgccgattttgcttctgagtccaacatatgaaatgta----attt-gtaccctttccaacgcttcaaagatcacctcaatc 375274  T
Q  122 ggacatccagagctccagatatagccaaaacaagatagacatatcatgacctacgaaaattaaactttgaacccaaaattaatttggttcttttattcca 221  Q
     ||  |||||||||| ||||||    || |||||| ||| | || ||||||||| ||||| | | |||||||| ||||| |||||| |||||||||||||    
T  375275 agagttccagagctctagatatgaggaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaat-aatttgattcttttattcca 375373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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